Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00721 ATGAAGTCTTGGTATCCAGATGAAAAAATAGAGGCTGATGGGATCGATGATCTTAAGAAACCTTTGTTGCAGACTTCACAAGATGTCGAAGATGGTATTGTTACACCTCAAATAAATGATATAAAAAGTGCATCCTACATAAGTATTGTTGATTCTAAAGTTAGAACCCTTAATGGGATAAACAGCAGCATCATGGGGTCGCCACTTGATGGCAGAGCTGCAATTGCAAACGAAATAGAAGAAACCATAGAAGACACTGGTTTTAGAGTTGATGAGCTCAGGGGGCAAGATCTATCAGAATGTCGAATCAAGATTAAGGGAATGACATGCACAAGCTGCTCTCAGTCTGTTGAGCATGCCCTTCAAATGATTGATGGAGTGAAAAAGGCAGTAGTAGGTCTAGCTTTAGAGGAAGCAAAACTACACTTCGATCCTAACCTCATTGATACCAACAAAATAATTGAAGCTATAGAAGATGCTGGCTTTGGAGCTGATCTCATTAGCTCCAAGAATGATATGAACAAAGTGCATCTAAAACTTGAAGGGGTAGATTCTTCAGAAGATGTAAATATCATAATTTCTTCACTTAATTCAACTGTAGGTGTGAATCAAGTTGAAATGGATTTGACAGAATGGAAAGTTACTGTTAGATATGATCCGGACATTACAGGTCCAAGATCTCTTATACACTGCATTCAGGCAGCTAGCAACGGCCCCAATGTGTATCAAGCAACCTTGCACACTCCTTCAGGAAAAAGAGAAATGGAAAAGGTGAATGAAATACGTATGTACAGGGACCAAGTTTTGTTCAGTTGCTTATTTTCTGTTCCTGTGTTCTTATTTTCCATGGTTCTTCCCATGCTTCCTCCATATGGAAACTGGTTAAATTATAAGATCCATAAGATGCTCACTATTGGGTTGTTTTTAAGATGGACCCTCAGCACACCTGTGCAGTTCATTGTTGGCAAAAGGTTCTATGTGGGATCATATCATGCACTAAAGCGAAGGTCTGCTAACATGGATGTGCTGGTTGCGCTAGGAACTAATGCTGCTTATTTTTACTCACTCTATATTTTAATAAAAGCGCTGACTTCAGCTACATTTCAAGGACAAGATTTCTTCGAGACCAGTTCTATGCTGATATCGTTTATTTTATTAGGGAAGTATTTGGAGATTGTGGCTAAAGGGAAAACATCAGTTGCTTTAGAAAAACTTACACAACTTGTTCCTGATAAAGCTTATTTGTTAGCACTTGATACTAATGGAAATGTCGTCACCGAGACAGAAATTGAGACTGAACTTATACAAAAGAATGACATAATTAAGATTATTCCTGGCGCAAAAATTCCTGTTGATGGTATTGTGATAAAAGGGAAAAGTTGTGCGAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTGAATAAAACTGCAGGAGACAAGGTTATCAGTGGGACCATCAATGAGAATGGCTGCTTACTTGTTAAGGCCACGCATGTTGGATCAGAGACTGCACTTTCTCAAATTGTTCAACTCGTAGAAGCTGCTCAACTTGCTAGAGCACCAGTTCAAAAACTTGCTGATCATATTTCAAGGGTTTTTGTTCCAATTGTGGTTGTTGCAGCATTCGTGACTTGGCTGGGATGGTTTATTCCTGGAGAAGCCGGTTTTTACCCTAAATATTGGATACCACAAGCTATGGACACATTTGAATTTGCTTTGCAATTTGCTATTTCTGTGCTAGTTGTTGCTTGCCCATGTGCTCTGGGTCTAGCCACACCAACGGCAATCATGGTTGCTTCTGGCATTGGTGCTTCTCGAGGTGTGCTCATCAAGGGCGGAGATGCAATGGAAAAGGCACACAAGGTAAAAATTGTTGTCTTTGATAAGACCGGTACATTGACAATTGGGAAGCCAACCGTCGTTAGTTCAGTGCTGTTTTCTAAAATTTCTATGGAGGAGTTTTGTGATATGGCAATTTCTGTGGAGGCAAATAGTGAACATCCGATTGCAAAAGCTGTTGTGGCACATGCTAAGAGGCTGCGCCAGAAGTTTGGGTCCTGCACTGAACAAGTCCTAGATGTGAAGGACTTTGAGGTACACCTGGGGGCTGGTGTAAGTGGAAAAGCTAATGATAAAACAGTTTTAGTTGGAAACAAGAGACTCATGCATGATTATAATGTCCCAATATGGCCCGAGGTGGCGAGGTACATCTCTGAGAATGAAGTTCTGGCAAGAACTTGTGTATTAGTTTCAATTGACAGAAAGATTTCTGGAGCATTCTCTGTAACTGACCCTGTAAAGCCAGAGGCTAAACGTATCATATCTTTTCTCCATTCCATGGGCATTTCAAGCATCATAGTGACTGGTGATAATTGGGCCACTGCAACTACTATTGCAAATGAAGTTGGCATTGATGAGGTCTTTGCTGAGACGGATCCTCTAGGAAAAGCTGATAAAGTGAAAGATTTGAAGATGAAAGGAATGACTGTGGCAATGGTGGGAGATGGAATAAATGATTCGCCAGCCTTAGCTGCTGCAGATGTTGGCATGGCAATTGGTGCTGGAACTGATGTAGCTATAGAGGCAGCTGATATAGTTCTAGTCAAAAGCAACTTGGAAGATGTGATTACAGCCATAGATTTGTCTAGAAAGACCATGTCTCGTATCTGGCTTAACTACATCTGGGCCTTTGGTTACAACATTCTTGGCATGCCTATTGCAGCTGGTGTCTTGTACCCCATTTTTGGAATCAGGTTGCCTCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCATCGCTTAGCGTGGTTTCTTCATCCCTCTTGCTAATGTTTTATAAAAAACCTTTGAATATGGATTCTACTGGATCACATATTCAAGCTCTTCATTAG 2892 0.4094 MKSWYPDEKIEADGIDDLKKPLLQTSQDVEDGIVTPQINDIKSASYISIVDSKVRTLNGINSSIMGSPLDGRAAIANEIEETIEDTGFRVDELRGQDLSECRIKIKGMTCTSCSQSVEHALQMIDGVKKAVVGLALEEAKLHFDPNLIDTNKIIEAIEDAGFGADLISSKNDMNKVHLKLEGVDSSEDVNIIISSLNSTVGVNQVEMDLTEWKVTVRYDPDITGPRSLIHCIQAASNGPNVYQATLHTPSGKREMEKVNEIRMYRDQVLFSCLFSVPVFLFSMVLPMLPPYGNWLNYKIHKMLTIGLFLRWTLSTPVQFIVGKRFYVGSYHALKRRSANMDVLVALGTNAAYFYSLYILIKALTSATFQGQDFFETSSMLISFILLGKYLEIVAKGKTSVALEKLTQLVPDKAYLLALDTNGNVVTETEIETELIQKNDIIKIIPGAKIPVDGIVIKGKSCANESMITGEARPVNKTAGDKVISGTINENGCLLVKATHVGSETALSQIVQLVEAAQLARAPVQKLADHISRVFVPIVVVAAFVTWLGWFIPGEAGFYPKYWIPQAMDTFEFALQFAISVLVVACPCALGLATPTAIMVASGIGASRGVLIKGGDAMEKAHKVKIVVFDKTGTLTIGKPTVVSSVLFSKISMEEFCDMAISVEANSEHPIAKAVVAHAKRLRQKFGSCTEQVLDVKDFEVHLGAGVSGKANDKTVLVGNKRLMHDYNVPIWPEVARYISENEVLARTCVLVSIDRKISGAFSVTDPVKPEAKRIISFLHSMGISSIIVTGDNWATATTIANEVGIDEVFAETDPLGKADKVKDLKMKGMTVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAADIVLVKSNLEDVITAIDLSRKTMSRIWLNYIWAFGYNILGMPIAAGVLYPIFGIRLPPWLAGACMAASSLSVVSSSLLLMFYKKPLNMDSTGSHIQALH* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00721 963 FunFam Copper-transporting ATPase 1, putative 395 517 - -
Rops3g00721 963 FunFam Copper-transporting ATPase HMA5 98 169 - -
Rops3g00721 963 SUPERFAMILY Calcium ATPase, transduction domain A 427 513 IPR008250 -
Rops3g00721 963 CDD HMA 103 164 IPR006121 GO:0046872
Rops3g00721 963 ProSitePatterns Heavy-metal-associated domain. 105 134 IPR017969 GO:0046872
Rops3g00721 963 PRINTS H+-transporting ATPase (proton pump) signature 865 890 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g00721 963 PRINTS H+-transporting ATPase (proton pump) signature 834 850 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g00721 963 ProSiteProfiles Heavy-metal-associated domain profile. 99 165 IPR006121 GO:0046872
Rops3g00721 963 SFLD C1.7: P-type atpase like 609 886 - -
Rops3g00721 963 SUPERFAMILY HAD-like 625 940 IPR036412 -
Rops3g00721 963 Pfam E1-E2 ATPase 421 605 - -
Rops3g00721 963 NCBIfam HAD-IC family P-type ATPase 380 911 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops3g00721 963 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 34 952 - -
Rops3g00721 963 NCBIfam heavy metal translocating P-type ATPase 340 943 IPR027256 GO:0006812|GO:0016020|GO:0019829
Rops3g00721 963 ProSitePatterns E1-E2 ATPases phosphorylation site. 629 635 IPR018303 -
Rops3g00721 963 Gene3D - 99 171 - -
Rops3g00721 963 Gene3D - 618 884 IPR023214 -
Rops3g00721 963 Pfam haloacid dehalogenase-like hydrolase 623 848 - -
Rops3g00721 963 SFLD p-type atpase 609 886 IPR044492 -
Rops3g00721 963 FunFam Probable copper-transporting ATPase HMA5 748 891 - -
Rops3g00721 963 SUPERFAMILY HMA, heavy metal-associated domain 169 239 IPR036163 GO:0046872
Rops3g00721 963 PRINTS P-type cation-transporting ATPase superfamily signature 781 791 - -
Rops3g00721 963 PRINTS P-type cation-transporting ATPase superfamily signature 759 770 - -
Rops3g00721 963 PRINTS P-type cation-transporting ATPase superfamily signature 834 853 - -
Rops3g00721 963 PRINTS P-type cation-transporting ATPase superfamily signature 857 869 - -
Rops3g00721 963 PRINTS P-type cation-transporting ATPase superfamily signature 463 477 - -
Rops3g00721 963 PRINTS P-type cation-transporting ATPase superfamily signature 627 641 - -
Rops3g00721 963 Pfam Heavy-metal-associated domain 103 162 IPR006121 GO:0046872
Rops3g00721 963 CDD P-type_ATPase_Cu-like 268 930 - -
Rops3g00721 963 Gene3D - 638 767 IPR023299 GO:0000166
Rops3g00721 963 Gene3D - 395 517 - -
Rops3g00721 963 ProSiteProfiles Heavy-metal-associated domain profile. 174 240 IPR006121 GO:0046872
Rops3g00721 963 Gene3D - 172 247 - -
Rops3g00721 963 SUPERFAMILY HMA, heavy metal-associated domain 96 169 IPR036163 GO:0046872
Rops3g00721 963 SUPERFAMILY Calcium ATPase, transmembrane domain M 372 618 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00721 Rops-Chr3 8818645 8823609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00721 50 953 Primary Pumps ATPases AT1G63440 55.664 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00721 K17686 - gmx:100793894 1471.83