Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00720 ATGACCAATTCCTACAGCTCCAATGAATTCAATTTTTTGTTGGACCTCAATTCTCCATCCCTTATCTCTTCTTCTTCATCATCATCATCTTCTTCTTCCAACCCACCATTCTATTTTCCTTCTAGTTATCATAACTGCACTAGTGGCTTATCTTTTACTCAGTTCCAATCCTCTCATCCTCTAAAAAATCCCCTTTCTCTCCTTCATCTAAGCCCCACAAAACATGAAGATCTTGAATCTTCATATAGTGCCATGAAAGTGGACAAGAAGGAGAAAGAACTAAGTATATCATCTAGCTCTTTGGATGAGGATGACATGACGGTGGCTTTACACTTAGGGCTTCCAAGCACGATTTCAGCTGATTTATGTTCAGACCTATACTCCACAGAAATTTCACACAAAGAAGAAGAAGTCACTGTTGCTTCTGGGTTTCTGTCAAATAGTATTAACAGAGAACAATATTGGATCCCAACCTCTACTCAGATTCTGATTGGTCCAACACAGTTCGCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGACCAGAGTCACTAAGGGGAACACAGCCCACAGCCATGCTTAAACTCCCTTGCTATTGCTGTGCACCAGGATGCAAGAACAACATTGACCATCCAAAAGCAAAACCACTCAAAGACTTCAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGAACGAAGCCTTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTAAGAGGTGATTGGAGAACTCATGAAAAGAACTGTGGGAAGCGCTGGTATTGCTCTTGTGGGTCTGATTTTAAGCATAAAAGATCCCTTAAAGATCATATCAAGGCATTTGGATATGGACATACAGCTTATGGGATTGAATGTCTTGATCAAAATGATGAAGAAGGCTTCGAAATTGACCAAGAAAATGAACCTTTCTGGTCATAG 996 0.4046 MTNSYSSNEFNFLLDLNSPSLISSSSSSSSSSSNPPFYFPSSYHNCTSGLSFTQFQSSHPLKNPLSLLHLSPTKHEDLESSYSAMKVDKKEKELSISSSSLDEDDMTVALHLGLPSTISADLCSDLYSTEISHKEEEVTVASGFLSNSINREQYWIPTSTQILIGPTQFACPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLKLPCYCCAPGCKNNIDHPKAKPLKDFRTLQTHYKRKHGTKPFMCRKCCKAFAVRGDWRTHEKNCGKRWYCSCGSDFKHKRSLKDHIKAFGYGHTAYGIECLDQNDEEGFEIDQENEPFWS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00720 331 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Rops3g00720 331 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Rops3g00720 331 SUPERFAMILY beta-beta-alpha zinc fingers 235 273 IPR036236 -
Rops3g00720 331 PANTHER ZINC FINGER PROTEIN WIP2 26 324 IPR043584 GO:0003700|GO:0010468
Rops3g00720 331 FunFam Zinc finger protein WIP2 222 304 - -
Rops3g00720 331 Gene3D Classic Zinc Finger 211 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00720 Rops-Chr3 8791201 8793446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00720 1 327 C2H2 Transcription Factor Family AT1G51220 55.202 1.59e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops3g00720 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00720 - - gmx:100802239 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00830 7 11090278 11092401 Rops3g00720 3 8791201 8793446 PCT