Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00715 ATGGACCATGAAAAGACTGGATGCCAAGCTCCCCCTGAAGGTCCTGTATTGTGCATCAACAACTGTGGATTTTTTGGAAGTGCAGCTACCATGAACATGTGTTCTAAGTGCCACAAAGACATGATGCTGAAACAGGAGCAGGCCAAGCTTGCAGCATCATCCATTGGAAATATTATGAATGGGTCATCGAGCAGCACTGAAAACGAACCTGTTGTTGCTGCCAATGGGGATATCCCAGTTGTTTCAGTAGAGCCTAAAACTATCTCTGTGCAGCCTTTATTTGCTTCGGGTTCAGAGGAGAGTGGTGGTGAGGCAAAGCCGAAGGATGGTCCAAAACGTTGCAGCAGGTGCAATAAGCGAGTTGGTTTGACAGGGTTTAATTGTCGATGTGGTAACCTTTTCTGTGCTGTACATCGCTACTCAGACAAGCATAATTGCCCATTTGATTACCGCACTGCTGCACGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGATAAGATCTAA 522 0.4636 MDHEKTGCQAPPEGPVLCINNCGFFGSAATMNMCSKCHKDMMLKQEQAKLAASSIGNIMNGSSSSTENEPVVAANGDIPVVSVEPKTISVQPLFASGSEESGGEAKPKDGPKRCSRCNKRVGLTGFNCRCGNLFCAVHRYSDKHNCPFDYRTAARDAIAKANPVVKAEKLDKI* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00715 173 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Rops3g00715 173 Pfam A20-like zinc finger 17 39 IPR002653 GO:0003677|GO:0008270
Rops3g00715 173 SMART AN1_Zf_4 114 151 IPR000058 GO:0008270
Rops3g00715 173 Pfam AN1-like Zinc finger 114 150 IPR000058 GO:0008270
Rops3g00715 173 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Rops3g00715 173 SUPERFAMILY AN1-like Zinc finger 100 168 IPR035896 -
Rops3g00715 173 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Rops3g00715 173 Gene3D - 1 70 - -
Rops3g00715 173 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 173 - -
Rops3g00715 173 FunFam Zinc finger AN1-type containing 6 89 169 - -
Rops3g00715 173 Gene3D - 94 169 IPR035896 -
Rops3g00715 173 ProSiteProfiles Zinc finger AN1-type profile. 108 154 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00715 Rops-Chr3 8732050 8734686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00715 4 173 C2H2 Transcription Factor Family AT3G52800 42.135 9.05e-37 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00715 - - gmx:100500070 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00715 3 8732050 8734686 Rops3g00715 3 8732050 8734686 ECH