Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00714 ATGAACAACAACTGGCTTTCTTTCCCTCTCTCTCCTTCTCATTCTTCCTTACCTGCTGCTCATGATCTTCAAGCAACCCAATATCATCAATTTTCTCTTGGGTTAGTGAACGAGAATATTGAAAACCCTTTTCAAAATCATGATTGGAATCTGATTAATACTCACAGCAGCAACGAAGTCCCTAAGGTTGCAGATTTTCTTGGTGTGAGTAAGTCTGAGAATCAGTCAGATCTTGCTGCCTTGAACGGAATTCAGTCAAATGATTCAGATTATCTGTTCACAAATAACAGTCTCGTGCCTGTGCATAACCAAGTGGTAACCACATCTAGTAATGAGTACCAAGAAAATGCTAATAATAATTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAGGATTCAACATGTGATACAAGTGGTGACAATAGTACAAACACTGTTGAAGCGGTGTCTAGAAGAACTATGGATACCTTCGGGCAAAGAACATCAATCTACCGTGGTGTAACAAGGCATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGTCCTATGATTTAGCTGCACTGAAGTACTGGGGGACATCCACCACTACCAACTTTCCCATCAGCAACTATGAGAAGGAATTGGATGAAATGAAGCACATGACAAGACAAGAATTTGTGGCCGCTATTAGAAGGAAAAGCAGTGGTTTCTCGAGGGGTGCATCAATGTATCGCGGAGTCACAAGGCATCACCAGCATGGGAGATGGCAAGCAAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTACTTAGGAACATTCAGCACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCTGCAATTAAATTTAGAGGTCTTAACGCTGTGACAAACTTTGAAATGAGTCGTTACGATGTGAAAGCCATTCTTGAAAGCAACACTCTCCCAATAGGAGGAGGTGCTGCTAAACGACTGAAAGAAGCTCAAGCTCTAGAATCTTCGAGGAAACAACGGGAAGAGATGATTGCACTAGGCTCAAGCTTTCAATATGGAACCTCCTCAAGTTCTAGCAGGCTACAACCACAAGCTTACCCTCTAATGCACCAGCAGCATCAAACTCAACCTTTTCTAACTTTACAAAACAATGAATTCTCTCAGTTTTCTCAAGACCCTTTGTCTTCTTCACTGCATCATCATCATCAGAGCTATATCCAAACACAGCTTCAGTTGCACCAACAGAGTGATTCTTCTTACGCTCACCAATCGTCAGCTCAGAATGCTCAATTCTACAACGGTTACCTTCAGAACCACCCGGCTTATCTTAATGGAATGATGAACATGGGTACTGGTTCTTCATCATCAGTGATGGAGAACAATGATAGTAATAATGTTGGTGGGTCTAGTGGGAGTTATGGTGGAGGGTTTATGGGTAACGCAGTGGGATCAGCGGAGGAACCTGGGTTGGTTAAGGTTGATTATGATATGGCTGCCGGAGGTTATGGCGGCTGGTCGGCGGCGGAGTCCATGCACACGTCAAATGCTGCTGGTATGTTTTCAATGTGGAATGAGTGA 1635 0.4324 MNNNWLSFPLSPSHSSLPAAHDLQATQYHQFSLGLVNENIENPFQNHDWNLINTHSSNEVPKVADFLGVSKSENQSDLAALNGIQSNDSDYLFTNNSLVPVHNQVVTTSSNEYQENANNNLQSLTLSMGSGKDSTCDTSGDNSTNTVEAVSRRTMDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARSYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKQREEMIALGSSFQYGTSSSSSRLQPQAYPLMHQQHQTQPFLTLQNNEFSQFSQDPLSSSLHHHHQSYIQTQLQLHQQSDSSYAHQSSAQNAQFYNGYLQNHPAYLNGMMNMGTGSSSSVMENNDSNNVGGSSGSYGGGFMGNAVGSAEEPGLVKVDYDMAAGGYGGWSAAESMHTSNAAGMFSMWNE* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00714 544 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700|GO:0006355
Rops3g00714 544 PRINTS Ethylene responsive element binding protein signature 165 176 IPR001471 GO:0003700|GO:0006355
Rops3g00714 544 ProSiteProfiles AP2/ERF domain profile. 164 227 IPR001471 GO:0003700|GO:0006355
Rops3g00714 544 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 61 423 - -
Rops3g00714 544 FunFam AP2-like ethylene-responsive transcription factor 262 323 - -
Rops3g00714 544 Pfam AP2 domain 264 313 IPR001471 GO:0003700|GO:0006355
Rops3g00714 544 Pfam AP2 domain 164 219 IPR001471 GO:0003700|GO:0006355
Rops3g00714 544 FunFam AP2-like ethylene-responsive transcription factor ANT 163 229 - -
Rops3g00714 544 CDD AP2 262 323 IPR001471 GO:0003700|GO:0006355
Rops3g00714 544 Gene3D AP2/ERF domain 263 323 IPR036955 GO:0003700|GO:0006355
Rops3g00714 544 Gene3D AP2/ERF domain 164 229 IPR036955 GO:0003700|GO:0006355
Rops3g00714 544 CDD AP2 163 229 IPR001471 GO:0003700|GO:0006355
Rops3g00714 544 SUPERFAMILY DNA-binding domain 163 229 IPR016177 GO:0003677
Rops3g00714 544 ProSiteProfiles AP2/ERF domain profile. 263 321 IPR001471 GO:0003700|GO:0006355
Rops3g00714 544 SUPERFAMILY DNA-binding domain 262 323 IPR016177 GO:0003677
Rops3g00714 544 SMART rav1_2 164 233 IPR001471 GO:0003700|GO:0006355
Rops3g00714 544 SMART rav1_2 263 327 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00714 Rops-Chr3 8725587 8728251 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00714 3 544 AP2-EREBP Transcription Factor Family AT1G51190 63.926 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops3g00714 AP2 1.5e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00714 K09285 - gmx:100788471 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00714 3 8725587 8728251 Rops3g00714 3 8725587 8728251 ECH