Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00713 ATGAACAACAACTGGCTTTCTTTTCCCCTCTCTCCTTCTCATTCTTCCTTACCTGCTCATGATCTTCAAGCAACTCAATATCATCAATTTTCTCTTGGGTTAGTGAACGAGAACATTGAAAACCCTTTTCAAAATCATGATTGGAATCTGATTAATACTCACACAAGCAACGAAGTTCCAAAAGTTGCAGACTTTCTTGGTGTGAGCAAGTCTGAGAATCAGTCAGATCTTGCTCCCTTGAACGACATTCAGTCAAATGATTCAGATTATCTGTTCACAAATAACAGTCTCGTGCCTATGCATAACCCAGTGGTAACCACACCTACTAATGATTACCAAGAAAATGCTAATAGTAATTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAGGATTCAACATGCGAAACCAGTGGTGACAATAGTACAAACACTGTTGAAGCAGTGCCTAGAAGAACTGTGGAAACCTTCGGACAGAGAACATCAATATATCGTGGTGTAACAAGACATAGATGGACTGGACGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGGTGGATACGATAAAGAAGAGAAAGCAGCTAGGGCCTATGATTTAGCTGCACTGAAGTACTGGGGAACATCCACTACTACTAACCTTCCTATCAGCAACTATGAGAAGGAATTGGATGAAATGAAGCACATGACAAGACAAGAATTTGTGGCCGCTATTAGAAGGCATCACCAACATGGGCGATGGCAAGCGAGGATTGGAAGAGTAGCAGGAAACAAAGACCTTTACTTAGGAACTTTCAGCACTGAGGAAGAGGCTGCAGAAGCATACGACATAGCAGCGATTAAGTTTAGAGGTCTTAACGCTGTGACAAACTTTGACATGAGCCGTTACGATGTGAAAGCCATTCTTGAAAGCAACACTCTCCCAATAGGAGGAGGTGCTGCTAAACGACTAAAAGAAGCTCAAGCTTTAGAATCTTCGAGGAAGCAACGTGAAGAGATGATTGCACTAGGCTCAAGCTTTCAATATGGAACCTCCTCAAGTTCTAGTAGCAGGCTACAACAACAAGCTTACCCTATAATGCAACACCATCATACTCAACCTTTTCTAACCTTACAAAACAATGACATTTCTCAGTTTTCTCAAGACCCTTTGTCTTCTTCACTGCATCATCATCAGAGTTATATCCAAACACAGCTTCAGTTGCACCAGCAGAGTGGTTCTTCTTATGTTCACCAATCTTCAGCTCAGAATGCTCAATTCTACAACGATATTCAGAACCATCCGGCTTTGCTCCAGGGAATGATGAACATGAATAATAATAATAATAATAATGTTGGTGGGTCTAGTGGGAGTTATAGTGGAGGGTTTATGGGTAATGCAGTGGGATCAACGGAGGAACTTGGATTGGTTAAGGTTGATTACGACATGGCTGCTGGAGGTGATGGCGGCTGGGCGGCGGCGGAGTCCATGCACACGTCAAATGCTACTGGTTTGTTTACAACGTGGAATGACTGA 1548 0.4251 MNNNWLSFPLSPSHSSLPAHDLQATQYHQFSLGLVNENIENPFQNHDWNLINTHTSNEVPKVADFLGVSKSENQSDLAPLNDIQSNDSDYLFTNNSLVPMHNPVVTTPTNDYQENANSNLQSLTLSMGSGKDSTCETSGDNSTNTVEAVPRRTVETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNLPISNYEKELDEMKHMTRQEFVAAIRRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKQREEMIALGSSFQYGTSSSSSSRLQQQAYPIMQHHHTQPFLTLQNNDISQFSQDPLSSSLHHHQSYIQTQLQLHQQSGSSYVHQSSAQNAQFYNDIQNHPALLQGMMNMNNNNNNNVGGSSGSYSGGFMGNAVGSTEELGLVKVDYDMAAGGDGGWAAAESMHTSNATGLFTTWND* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00713 515 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 PRINTS Ethylene responsive element binding protein signature 285 305 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 Pfam AP2 domain 249 295 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 Pfam AP2 domain 163 218 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 SUPERFAMILY DNA-binding domain 251 305 IPR016177 GO:0003677
Rops3g00713 515 CDD AP2 162 228 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 ProSiteProfiles AP2/ERF domain profile. 163 226 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 SMART rav1_2 163 232 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 SMART rav1_2 249 309 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 CDD AP2 249 305 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 61 397 - -
Rops3g00713 515 FunFam AP2-like ethylene-responsive transcription factor ANT 162 228 - -
Rops3g00713 515 ProSiteProfiles AP2/ERF domain profile. 244 303 IPR001471 GO:0003700|GO:0006355
Rops3g00713 515 Gene3D AP2/ERF domain 163 228 IPR036955 GO:0003700|GO:0006355
Rops3g00713 515 Gene3D AP2/ERF domain 247 305 IPR036955 GO:0003700|GO:0006355
Rops3g00713 515 SUPERFAMILY DNA-binding domain 162 228 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00713 Rops-Chr3 8702044 8704686 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00713 3 515 AP2-EREBP Transcription Factor Family AT1G51190 62.116 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Rops3g00713 AP2 2.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00713 K09285 - gmx:100788471 778.089