Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00705 ATGGAGTCAGATCTTCAGCAACACCCTCCAATGTTTCTGGATCATCAGCACCACCATCAGCAACAGATGAATTCAGGGTTGACACGGTTTCGATCGGCTCCAAGTTCCTTTTTTTCGAATATCATTGACCGTGAGTTCTATGAGAGTCTCTTCAATAAACCCTCCAGCCCTGAAACTGAAAGAGTTTTCGCACGGTTTATGAATAGTCTTAGTGGCGGTGATGATGCTGCAGAGGAATCACTTGCTCCTCAGAATCTCTCAACTGTTCAACAAGTTACTGTAGTGAAAGAAGAGGTTAATCAGCAATCTCAGGCTATGCCATCTATGAATAATGAACCTGTGGTTCTTCAACACCACCAGCAGCAGCAACAGCAACAGCAACAACAGCAGCAAAGTAATATCAATAATTATGGCTCATTTGTACCTCAGAATTTTTACCAAAGTTCTGGAAGACCACCTTTGCCAAATCAGATGAAGACTGGTCGTGGAAATAATTCCAATCTTATCAGACATGGTAGCTCACCTGCGGGATTGTTTTCAAACATTAACATTGAAGGTGGCTATGCTGCTATGAGAGGCATGAGAGCTGGTAATAACACTAACGAGGAAGCAAACTTTTCTCCTGCATCGAGGTTGAAGAATGCACCAAACTACTCCTCAGGGATAATGTCATCAAGAGCTGAAATTGTGAAGAAAAGCAACGCACAAAATAATCCAGAAAGTGAAGGTTTTGCTGAAAGCCAGGGTAATGATTTTATCCCAGGTTTCCCTGTAAATCCGTGGGATGATTCTTCCGCAGTCATGTCTGAGAATGTGACTGGTCTGAAAAGATACAGAGATGATGATGTAAAACCATTTTCTGGTTTAAATGCAGCTGAAAGTCAGAATGAAACAGGAGGCCAGCCTCCTCCTGCTCCTTTGGCTCATCAATTGAGCTTGCCTAATACTTCAGCGGAAATGGAAGCCATTGAGAAGTTTTTGCAGTTCTCAGATTCTGTTCCATGCAAAATTCGTGCCAAGAGGGGATGTGCCACTCACCCAAGAAGCGTTGCAGAGAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTCAGACCCTTTCAGACTGTCGTGCTAAGTGTACGTGTTCACACAAGCTGTAG 1242 0.4308 MESDLQQHPPMFLDHQHHHQQQMNSGLTRFRSAPSSFFSNIIDREFYESLFNKPSSPETERVFARFMNSLSGGDDAAEESLAPQNLSTVQQVTVVKEEVNQQSQAMPSMNNEPVVLQHHQQQQQQQQQQQQSNINNYGSFVPQNFYQSSGRPPLPNQMKTGRGNNSNLIRHGSSPAGLFSNINIEGGYAAMRGMRAGNNTNEEANFSPASRLKNAPNYSSGIMSSRAEIVKKSNAQNNPESEGFAESQGNDFIPGFPVNPWDDSSAVMSENVTGLKRYRDDDVKPFSGLNAAESQNETGGQPPPAPLAHQLSLPNTSAEMEAIEKFLQFSDSVPCKIRAKRGCATHPRSVAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVEYIKDLQNQVQTLSDCRAKCTCSHKL* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00705 413 MobiDBLite consensus disorder prediction 232 258 - -
Rops3g00705 413 Gene3D - 344 411 IPR036638 GO:0046983
Rops3g00705 413 FunFam Transcription factor bHLH130 family 344 412 - -
Rops3g00705 413 SMART finulus 349 399 IPR011598 GO:0046983
Rops3g00705 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 346 406 IPR036638 GO:0046983
Rops3g00705 413 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 407 - -
Rops3g00705 413 MobiDBLite consensus disorder prediction 114 169 - -
Rops3g00705 413 MobiDBLite consensus disorder prediction 279 309 - -
Rops3g00705 413 Pfam Helix-loop-helix DNA-binding domain 349 394 IPR011598 GO:0046983
Rops3g00705 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00705 Rops-Chr3 8549110 8552285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00705 1 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.336 1.96e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops3g00705 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00705 - - gmx:100803833 609.372