Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00685 ATGGACTCCGAGGATGATATGCACGACGCAAACGACGTCGAATCCCTCGACGATGATTTCTACAGTGGCGAGACGGAGGATGTTCCAATGGATTACTACAGCGATTACGATGATGACGCCGATGATTACTTCGACGATGCCGATATGATTGAATCTCGTCGCCCTGAGCAAAATTTTACCATCTTGAAGGAATCCGATATCCGACTAAGACAGGAAGAGGACATCACTAGAGTAGCAACGGTTCTTTCCATACCGAAAGTTCTTGCGAGCATACTACTTCGTCACCACAATTGGAGCGTCAGTAAAGTGCATGATGCATGGTTTGCCGATGAAGATCGAGTCCGGAAAGCAGTTGGGTTGTTGGAGAAGCCAGTTGTTCAGTATCCTAATGCTAGAGAGCTTACATGCGGCATCTGTTTTGAAAACTATCCTCGTGCTACGATTGAGATGGCTTCTTGTGGTCATCCCTACTGTTTCACATGCTGGGAAGGATATATCAGCACATCCATTAATGATGGCCCTGGATGTTTGATGCTGAGATGTCCTGATCCCGCATGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTAATAGCATCTGATGAAGATAAACATAAGTATGCCCGATACCTTATTAGATCTTATATTGAAGACAGTAAAAAGTCGAAGTGGTGTCCTGCTCCTGGTTGCGAATATGCAGTTACTTTTGATGCTGGCAGTGGAAATTATGATGTCTCTTGCCTCTGTTCATATGGCTTTTGTTGGAGTTGCACTGAGGAGGCTCATCGTCCGGTGGACTGTGGCACTGTGTCAAAGTGGATTTTGAAAAACAGTGCAGAGTCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCATGTCCAAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACATGCACTCCACCCTGTAAATTTGAATTTTGCTGGCTATGCCTTGGTGCGTGGTCAGACCATGGTGAAAGAACTGGCGGTTTTTATGCTTGCAATCGTTATGAAACAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCAAAGAATTCATTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAACCAATCCTCTAGGCAAAAAGCTCTTGCAGATCTGCATCAGATGCAAACTGTTCAAATTGAGAAGCTTAGCGACAAACAGTGCCAACCTGAGTCACAGCTGAAGTTCATAACTGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGGGTGCTGAAATGGACGTATTCATATGGGTACTACTTACCTGAGCATGAGCATGCGAAAAAACAGTTCTTTGAGTACTTGCAAGGTGAAGCAGAATCTGGTCTGGAGAGACTTCATCAATGTGCGGAAAAAGAACTGCAGCCATTCCTCAGTGCTGACGGTCCATCTGGAGAATTCAATGACTTTCGTACAAAGCTAGCTGGATTGACTAGTGTGACTAAAAACTACTTCGAGAATTTAGTGAAGGCATTAGAGAATGGTCTATCCGATGTGGATGGTAATGGAGCTGCCTTCAGCAGAGCAACGAGCTCAAAAAATGCTGCAGGGAGTAGCAAGGGGAGAGCTGGAAGAGGAAAGGGAACTTTTCGAACCAGCATGTCCAGCAGAATGTCTGATGATTCTCATTGGTTTTGCGAGCATTGTACCTATGCAAACGTTAAATCTGCCACTATATGCCAGATTTGCAATCAACAGCGTCGATAA 1764 0.4467 MDSEDDMHDANDVESLDDDFYSGETEDVPMDYYSDYDDDADDYFDDADMIESRRPEQNFTILKESDIRLRQEEDITRVATVLSIPKVLASILLRHHNWSVSKVHDAWFADEDRVRKAVGLLEKPVVQYPNARELTCGICFENYPRATIEMASCGHPYCFTCWEGYISTSINDGPGCLMLRCPDPACGAAVGQDMINLIASDEDKHKYARYLIRSYIEDSKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYGFCWSCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYETAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVQIEKLSDKQCQPESQLKFITEAWLQIVECRRVLKWTYSYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLSADGPSGEFNDFRTKLAGLTSVTKNYFENLVKALENGLSDVDGNGAAFSRATSSKNAAGSSKGRAGRGKGTFRTSMSSRMSDDSHWFCEHCTYANVKSATICQICNQQRR* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00685 587 Gene3D - 263 518 - -
Rops3g00685 587 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 433 IPR031127 GO:0004842|GO:0016567
Rops3g00685 587 FunFam RBR-type E3 ubiquitin transferase 268 518 - -
Rops3g00685 587 SMART ibrneu5 205 267 IPR002867 GO:0008270
Rops3g00685 587 SMART ibrneu5 280 341 IPR002867 GO:0008270
Rops3g00685 587 SMART zf_4 561 585 IPR001876 -
Rops3g00685 587 MobiDBLite consensus disorder prediction 1 32 - -
Rops3g00685 587 FunFam RBR-type E3 ubiquitin transferase 130 219 - -
Rops3g00685 587 ProSiteProfiles TRIAD supradomain profile. 132 345 IPR044066 -
Rops3g00685 587 CDD RING-HC_ARI6-like 133 194 - -
Rops3g00685 587 CDD BRcat_RBR_ANKIB1 212 276 - -
Rops3g00685 587 SUPERFAMILY RING/U-box 286 334 - -
Rops3g00685 587 SUPERFAMILY RING/U-box 206 274 - -
Rops3g00685 587 SUPERFAMILY RING/U-box 132 217 - -
Rops3g00685 587 ProSiteProfiles Zinc finger RING-type profile. 136 180 IPR001841 -
Rops3g00685 587 MobiDBLite consensus disorder prediction 529 552 - -
Rops3g00685 587 Pfam Ariadne domain 354 515 IPR045840 -
Rops3g00685 587 CDD Rcat_RBR_ARI7-like 290 344 - -
Rops3g00685 587 Pfam IBR domain, a half RING-finger domain 284 332 IPR002867 GO:0008270
Rops3g00685 587 Pfam IBR domain, a half RING-finger domain 206 267 IPR002867 GO:0008270
Rops3g00685 587 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Rops3g00685 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 219 IPR013083 -
Rops3g00685 587 SUPERFAMILY Ran binding protein zinc finger-like 559 586 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00685 Rops-Chr3 8339562 8350163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00685 17 586 ARIADNE family AT1G65430 69.191 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00685 K11968 - gmx:100784195 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00427 7 5345642 5356076 Rops3g00685 3 8339562 8350163 PCT