Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00684 ATGGGAAGCTGTGTATCAACACAAGGCAAACCTGGGCCACGCAAGAGGTCCAAGGATCATATCAAGCACAAGAATGAGCCGCATGAGGTTGCAACACCCACGGCGCCACGAAGGTCTAGCGTGACGGCGCGGCCCCTTAACGTGGTGACAAATCCAACCGCCGGTAACATCTTCAACAAGTATGAGTTGGGGAAGGAATTAGGGCGTGGAGAGTTTGGGGTGACGCACCGTTGCATTGACCTGAAGACGGGTGAGGCGTTGGCATGCAAGAAGATAGCGAAGACGAAGCTGAGGACGGAGATTGACGTTCAAGATGTGAGGAGAGAGGTGCAGATAATGAGGCATTTGCCTCAACACCCTAATATTGTGTCCTTTAGGGAGGCCTTTGAGGATAGAGATGCTGTGTACCTTGTCATGGAACTTTGTGAAGGTGGTGAGCTCTTTGATAGGATTGTTGCCAAAGGACATTACACCGAACGTGCTGCTGCTAATGTTACCAAGACCATACTTGAAGTTTGCAAGGTGTGCCATGAGCATGGTGTAATACATAGGGATTTGAAACCAGAAAATTTCTTATTTGCAGATGGAAGTGAGACTTCTCAACTAAAGACAATTGATTTTGGCCTTTCCACCTTCTATAAGCCTGGTGAAAGATTCAGTGAAATTGTTGGAAGTCCCTATTACATGGCTCCCGAGGTTTTAAGACGTAACTATGGACCAGAAATTGATGTCTGGAGCACAGGCGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAAGTGAAGAAGGGATTGCACAGGCGATAATCCGGGGCCATATTGATTTCACCAGAGATCCTTGGCCTAAAGTTTCAGAAGAAGCAAAAGACCTAGTTAAGCGTATGCTTGATCCAAATCCACACACCCGGGTTACAGTTCAAGAAGTCCTTGAACATTCATGGATACAACATAGGGAACACGGTCGAAATGTTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCACATTGATGAACAGATTCAAAAAGAAGGTTCTTAGAGTGGTGGCTGATATCCTTCCAGATGAGCAAGTTGATAGGTTTAAGCAAATGTTTGATATGATGGACAAGGACAAAAATGGAAACTTATCATTTGAAGAGCTCAAAGATGGCCTTTCAATGATTGGACATGCTATTCCTGATCCTGATGTTCAGATGTTAATGGATGCTGCAGATATTGATGGAAATGGCACCCTCAATTATGAAGAGTTCATCACAATGAGTGTTCATTTGAGAAAGATAGGAAGCGATGAGCATCTCTCTGAAGCATTCCGTTACTTTGACAAGAATCAGAGTGGATATGTTGAGTTTGATGAGTTGAAAGATGCCTTATCAGATGATGACTCGAGTGATGAACAGGTGATCAAAGACATTCTAAACGATGTCGACTTGGATAAGGATGGTCGAATCAGTTTTGAGGAGTTTAAGGCAATGATGAACACAGGAGGAGATTGGAAAATGGCTTCTCGTCAGTATTCAAGAGCATTTCTAAATGCATTAAGCTTCAGGATGTTCAAAGACAAATCTGGAGGTGTAACTAACTAA 1602 0.4351 MGSCVSTQGKPGPRKRSKDHIKHKNEPHEVATPTAPRRSSVTARPLNVVTNPTAGNIFNKYELGKELGRGEFGVTHRCIDLKTGEALACKKIAKTKLRTEIDVQDVRREVQIMRHLPQHPNIVSFREAFEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVTKTILEVCKVCHEHGVIHRDLKPENFLFADGSETSQLKTIDFGLSTFYKPGERFSEIVGSPYYMAPEVLRRNYGPEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIRGHIDFTRDPWPKVSEEAKDLVKRMLDPNPHTRVTVQEVLEHSWIQHREHGRNVSLGDQVRMRIKQFTLMNRFKKKVLRVVADILPDEQVDRFKQMFDMMDKDKNGNLSFEELKDGLSMIGHAIPDPDVQMLMDAADIDGNGTLNYEEFITMSVHLRKIGSDEHLSEAFRYFDKNQSGYVEFDELKDALSDDDSSDEQVIKDILNDVDLDKDGRISFEEFKAMMNTGGDWKMASRQYSRAFLNALSFRMFKDKSGGVTN* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00684 533 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Rops3g00684 533 CDD EFh 438 498 IPR002048 GO:0005509
Rops3g00684 533 Gene3D Phosphorylase Kinase; domain 1 63 146 - -
Rops3g00684 533 SUPERFAMILY Protein kinase-like (PK-like) 44 326 IPR011009 -
Rops3g00684 533 FunFam calcium-dependent protein kinase 13 147 327 - -
Rops3g00684 533 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Rops3g00684 533 ProSiteProfiles Protein kinase domain profile. 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00684 533 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Rops3g00684 533 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Rops3g00684 533 Pfam Protein kinase domain 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00684 533 FunFam Calcium-dependent protein kinase 1 63 146 - -
Rops3g00684 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Rops3g00684 533 SMART serkin_6 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00684 533 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Rops3g00684 533 CDD STKc_CAMK 60 318 - -
Rops3g00684 533 CDD EFh 366 426 IPR002048 GO:0005509
Rops3g00684 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 54 491 - -
Rops3g00684 533 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Rops3g00684 533 Pfam EF-hand domain pair 379 429 IPR002048 GO:0005509
Rops3g00684 533 SUPERFAMILY EF-hand 359 498 IPR011992 -
Rops3g00684 533 FunFam Calcium-dependent protein kinase 7 328 502 - -
Rops3g00684 533 Gene3D Transferase(Phosphotransferase) domain 1 147 327 - -
Rops3g00684 533 Pfam EF-hand domain pair 437 498 IPR002048 GO:0005509
Rops3g00684 533 ProSiteProfiles EF-hand calcium-binding domain profile. 434 468 IPR002048 GO:0005509
Rops3g00684 533 Gene3D - 328 500 - -
Rops3g00684 533 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Rops3g00684 533 SMART efh_1 402 430 IPR002048 GO:0005509
Rops3g00684 533 SMART efh_1 366 394 IPR002048 GO:0005509
Rops3g00684 533 SMART efh_1 473 501 IPR002048 GO:0005509
Rops3g00684 533 SMART efh_1 438 466 IPR002048 GO:0005509
Rops3g00684 533 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00684 Rops-Chr3 8332627 8336718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00684 1 529 EF-hand Containing Proteins AT2G31500 67.658 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops3g00684 Pkinase 5.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00684 K13412 - gmx:100818929 902.894