Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00676 ATGTATCCCAAACGGTCTAGCCAAGATGGCCCTGTTTCTGGGCCGGTGCGCACAAGTGATAGGATCAAGACAAGGCCAAATGTTTATGGCCGACCATTCTTGTATTACAACACGAATCTTAGGCGCAATAGGAAAGGCAAGATCAAGACAAGGACAGCAGCTTCGCAGATTGCTAAGATGTTGCGTCCAGGGAATCGGAAAGCACAAGATTCAAATAATAATTCTGGCTCTGCCAACCTTCGACGTTCAACTAGGAAGAGAAGGGTTAATTTAAATCTTCAAGATTTCACAGACAGTTCTGGAGCTGAGGATGAAGACTTAATGAGACCCACATATCGACCATTGAGAAACCAGATTAACAATAGTGTCAGCCGGGGTGATTTAATGTCTTCTAAGCGTAAAAGAGCAGTGGAGACTAAACCAACACCTCGACGTGCAGGTCTACGACCTCGTCGTTCAAAGGCTGCTGCAAGAGAACAAATAATTTCAGAATCAGATGATGAGCAAGACCTTTCAGAAGAGAAGGTTGAACAAGATGAAACAGAAAATGGAAATGATGTTGAGGAAAATGATGCCGATGATGATCAAAATGAGATTGAAGGGGATGCAGAGGGTGAAGATGAAGGTGAGGATGAAGGTGATGAAGACGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGTTATGATCTTCGAAATCGTTCAGATGTCCGTAGGTTCTCTATGGAGGAAAGGAAGACCAGGCCAAGATCTCCTCGAAGAGTGTTACATCAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGGAAGGGTGGATCACGAGTTCATAAGCGTCATCGCTTAGCAAGACCTGAAGATTCTGATGACTCCCTTCTCGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATGGGGGCGAGGTGGCAGCAGATCTGGCCCACCTTGGCTTTTTGGGGGCTTAGACACGCATGGAACAACAGCTTGGGGATTAAATCTTGCTGCATCAGGTTGGGTTCATCAGGGTGATGCTCTGGCTACTCTAACATCTGGGATTCAAACCGCTGGGCCAAGCTCTAAGGGAGGGGCTGATATCCAACCTTTACAGGTTGATGATAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTGAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCGAGTTACCACATAACTCCACCTAGGGGGGTGTTGTTATGTGGGCCCCCTGGCACAGGGAAAACATTAATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGGCAATTGAAACTACTCTTTGAGGAAGCTCAGAGAAATCAACCTTCTATTATCTTCTTTGACGAAATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAAGAGCAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGTGGACAAGTTGTGTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGACGTCCTGGTAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTTGCGAGGCACGTGCTGAAATATTGGACATTCATACTCGTAAGTGGAAGCATCCTCCTCCAAAGGAACTGAAAACGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGATCTAAAGGCTCTCTGTACTGAAGCTGCCATTCGTGCTTTCCGTGAAAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTCATAGACGTTGATTCTATCAAGGTAGAAAAGTATCATTTTATTGAGGCAATGTCTACAATTACCCCTGCTGCTCATAGGGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATCTTGAGAAAGCCATGAGTATTATTTCTGATATTTTCCCTTCAGTATCTGTTGCTTCAGAATTGACCAAACTTTCAATGCTTTCATACGGGTCTGCAATTCCACTTGTGTATCGACCCAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCACCTTGGGCCTGCGGTTTTACATGAACTGGAAAAATTTCCTGTGCATTCATTAGGACTTCCATCGCTTCTATCAGATCCTAGTGCAAAGACACCAGAGGAGGCATTGGTACATATATTTGGTGAAGCTAGAAGAACAACACCATCGATTCTCTATTTACCTCAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCTGTTCTCCTGACTTTGCTAGAAGAATTGCCATCTGACTTACCTATCTTACTACTTGGGACATCGTCAGCTGCACTTGCTGAAGTTGAGGAAATCCCTACATCAGTTTTCCCTCTTCGCTCAGTTTATCAAGTGAACATGCCATCTACAAAAGATAGGACTTTGTTTTTCGATCGTTTAATAGAAGCTGCGTTGTCAGTATTATTGGAGGGAATCAGCAAGAAATCCCAGGATACGGGATGCCTTTCTGAACTTCCTAAGGCACCAAAATTGGCGAGTGGTCCAAAGGTATCTGAACTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGTAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATATTATATGACAAACGATTTAATGCCTTCCATTATCCAGTCTCAGATGAAGATGCACCTAATTATCGCTCAATTATACAGAACCCGATGGACATGGCTACCGTCCTGCAGCATGTTGATAATGGCCACTATATTACATGGGCTGCATTCCTGCAGGACATTGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGATGACTACAATGGTGCTAGGATTGTCAGCAGAGCTTGTGAGCTCCGTGATGCGGTGCATGGGATGCTCTCACAGATGGATCCAGCACTGGTTGCATACTGTGACAAAATTGCTAGCCAAGGTGGCCCAGTTCACTTGCCTGATGAATTTGGGGATTCTACATTCCCAGCTACGCCTGTTGTACAGCTGGGTACTGCTACTAGAACGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATATGGATCAGAGTTACGAAGCATTGAAGCGGACTAAGAAGATCAGTGATGTTGTGCATGCAGCAGATGACAAATCACAAGAAGATTCAATGCCATCAAAGTCCTCCCAGGAGCATCAGGCAAATGACATGAATTCTGAAAGGCCGGAACCTGTAACAATTGATGGAGATTTGCATGAAACTCGTACAAATAGCTTTCCTGATGGCAGCAGCCCTCATGATGTCACAATGCTAGATGCTGAATTTTCAAGTCAAGTAGAGTCTGTCAAGCAGCAATATGTCAAGCGTAGTGAAAACTACAGCATTCCACAACTTGAAAGGCTTTACTCGAGAATTATGAAGGGCGTGTTTGAAACCAAAGATAAAGCAATGGATGATGATCTTAAGACATCGATTGTGAGGTTTTTGTTGAAATTTGTAGAGGATGATGCAAATTTCTGA 3606 0.4423 MYPKRSSQDGPVSGPVRTSDRIKTRPNVYGRPFLYYNTNLRRNRKGKIKTRTAASQIAKMLRPGNRKAQDSNNNSGSANLRRSTRKRRVNLNLQDFTDSSGAEDEDLMRPTYRPLRNQINNSVSRGDLMSSKRKRAVETKPTPRRAGLRPRRSKAAAREQIISESDDEQDLSEEKVEQDETENGNDVEENDADDDQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEERKTRPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPWLFGGLDTHGTTAWGLNLAASGWVHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPKELKTELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFLIDVDSIKVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSIISDIFPSVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTLLEELPSDLPILLLGTSSAALAEVEEIPTSVFPLRSVYQVNMPSTKDRTLFFDRLIEAALSVLLEGISKKSQDTGCLSELPKAPKLASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPMDMATVLQHVDNGHYITWAAFLQDIDLIVSNAKAYNGDDYNGARIVSRACELRDAVHGMLSQMDPALVAYCDKIASQGGPVHLPDEFGDSTFPATPVVQLGTATRTSARLRHVQPEVNMDQSYEALKRTKKISDVVHAADDKSQEDSMPSKSSQEHQANDMNSERPEPVTIDGDLHETRTNSFPDGSSPHDVTMLDAEFSSQVESVKQQYVKRSENYSIPQLERLYSRIMKGVFETKDKAMDDDLKTSIVRFLLKFVEDDANF* 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00676 1201 Gene3D - 888 1016 IPR036427 GO:0005515
Rops3g00676 1201 ProSiteProfiles Bromodomain profile. 919 981 IPR001487 GO:0005515
Rops3g00676 1201 PRINTS Bromodomain signature 928 944 IPR001487 GO:0005515
Rops3g00676 1201 PRINTS Bromodomain signature 962 981 IPR001487 GO:0005515
Rops3g00676 1201 PRINTS Bromodomain signature 944 962 IPR001487 GO:0005515
Rops3g00676 1201 MobiDBLite consensus disorder prediction 1076 1130 - -
Rops3g00676 1201 Pfam Bromodomain 909 977 IPR001487 GO:0005515
Rops3g00676 1201 FunFam ATPase family AAA domain-containing protein 2B 552 637 - -
Rops3g00676 1201 Gene3D - 374 644 IPR027417 -
Rops3g00676 1201 PANTHER AAA DOMAIN-CONTAINING 1069 1180 IPR045199 -
Rops3g00676 1201 Pfam AAA+ lid domain 579 615 IPR041569 -
Rops3g00676 1201 MobiDBLite consensus disorder prediction 1096 1112 - -
Rops3g00676 1201 MobiDBLite consensus disorder prediction 166 223 - -
Rops3g00676 1201 Gene3D - 552 637 - -
Rops3g00676 1201 MobiDBLite consensus disorder prediction 266 291 - -
Rops3g00676 1201 SUPERFAMILY Bromodomain 894 1008 IPR036427 GO:0005515
Rops3g00676 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 915 IPR027417 -
Rops3g00676 1201 Gene3D - 683 844 IPR027417 -
Rops3g00676 1201 MobiDBLite consensus disorder prediction 1113 1130 - -
Rops3g00676 1201 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 641 IPR027417 -
Rops3g00676 1201 MobiDBLite consensus disorder prediction 66 80 - -
Rops3g00676 1201 Pfam ATPase family associated with various cellular activities (AAA) 416 551 IPR003959 GO:0005524|GO:0016887
Rops3g00676 1201 CDD Bromo_AAA 896 1006 - -
Rops3g00676 1201 ProSitePatterns AAA-protein family signature. 521 539 IPR003960 GO:0005524|GO:0016887
Rops3g00676 1201 FunFam ATPase family, AAA domain-containing 2 374 557 - -
Rops3g00676 1201 FunFam ATPase family AAA domain-containing protein 888 1016 - -
Rops3g00676 1201 SMART AAA_5 412 553 IPR003593 GO:0016887
Rops3g00676 1201 MobiDBLite consensus disorder prediction 60 236 - -
Rops3g00676 1201 MobiDBLite consensus disorder prediction 128 145 - -
Rops3g00676 1201 SMART bromo_6 896 1003 IPR001487 GO:0005515
Rops3g00676 1201 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00676 Rops-Chr3 8253902 8262640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00676 362 616 Calmodulin-binding Proteins AT3G56690 36.293 6.46e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00676 K22531 - gmx:100787765 2053.1