Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00671 ATGGGGCACAGTTCGAAGAAGAAGAAGAAGCACGGAGGGAGTGGTGGACGGAGGAACAAGACTTCTAAGGATCACTCTTCTCAATTCGGCTCCGATGATAACGACCTCCTTTCCGAAGAGATTACTGCATTATGTGCAATTTTCCAAGAGGAATGCAAAATCGTTCCTGGATCGTCTCCTCAAATTGTTATTAAGCTCAGGCCTTACTCGAAGGATATGGGTTATGAGGACCTAGATGTTTCTGCTCTTCTTCTTGTCAGGTGCTTGCCTGGGTATCCCTTCAAGTGCCCCAAGTTGCAGATTACTCCTGAGAATGGCTTATCTGATACTGATGCCAATCAACTTTTGTCTCTCCTCCATGATCAGGCCAATTTAAATGCAAGGGAGGGACGAGTGATGATCTTTAATTTGGTTGAGGCTGCTCAAGAATTTCTGTCTGGAATTGAGCCAATTGCCAAATCAACTGAATCTAAGCTTTTACTGTCAACTACAGAAAGCAATGAAGAACTGTTTCCAAAGGATATGGCATCTTCAAATAAGAATAGATCTTTTGTTTATGGCTTCATTGACCTTTTCAGTGGCTATGGAGAGTCCTGGAATTGGGGTTTTGGAATAGATGAAGCTGCTGGAAAAAGTTCTTTTCTCCCCCCCTCTAAGTTAGATGCCTCAAAACCACATTTTGTGGCCCGAGAAAAGAAATCTGATAGCAAGGAAAAACCATTAATAATGCAAGAACTTCCTGCCAAATTGGATACTGTTGGAGAAGTTAATGAAGACAGCAACAATAGCGTATCTTTGACTCATTCAAGTAGATCTCTGGTGGAGGATTTTGTAGGGAACGACAATGTAGGTGAGAAAGAGTATTTTATCGGTGACGAGTATATAACAGAAGATAATGAAGGTATGTATGAAAGTGAGTCTTCAGAGTCTCTGTCTTCTGCCTCCTTGCCTCATCACCAAGCACCTCTAACAGTAGAAAAGGATCTAATAATGGTCCACTTGCTTCGTCTTGTTTGTGCTTCAAAAGGAACACTGGCTGACTCTTTGCCACAATTAGCAACAGAGCTGTGCAATTTAGGGATCTTTTCTGACTCAGCACTTGATATGGCATCTAAACCACCTTCCCTTTTTAACAAAACCTTTGATTGTGTCTTCCAGAAACACCTGGCATCATCCCGAATATCTCAATTTTGGAAACCTTCTTCAGATCTTGGAGGATCTAACACAGTTTCCCATAGTTCTCGATATTTGAATGATTTTGAGGAGCTACGATCTCTTGGTCATGGTGGTTTTGGTTATGTGGTGTTGTGCAAGAATAAACTCGATGGAAGGCAGTATGCAGTAAAGAAAATTCGCCTTAAAGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACACGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTTCAGATTCTTATGGTGATTCTGCTTGGGGTTCAAGTACTCCAGTAAGCTCTACTTTCAGCTATAAAGCTGCAAGCTCCAACGATGCCATTGGGCATGAGAAGCAGCTTGAATCTACATACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCGCCAGGTGTTTGAATCATATAATCATTTTGACAAAGAACTGGCATGGCATTTGTTTCGCCAAATAGTGGAAGGTTTGGCACACATACATGGACAAGGAATAATTCATCGGGACTTAACACCAAGTAACATATTCTTCGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCTAAGTTCTTGAAGTTGGAGCAGCTGGATCAAGATCTAGGCCATCCTGCTGAAACAAATGGAGTTTCCATTGATGGCACTGGACAAGTTGGAACGTATTTCTATACAGCTCCTGAAATTGAGCAAGTATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTCAGGACAGCAATGGAAAGACATGTTGTTTTATCTGATCTTAAACTGAAAGGGGAACTTCCACCTGCTTGGGTTGCTGAGTTTCCAGAACAAGAATCCTTGCTGTGGCGGTTAATGTCTCCAGGTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTACGGAATGCATTTCCTCCACGAATGGAATCCGAATTATTGGATGATATCCTACGAACAATGCAGAAATCAGAGGATAGAAGCATATACGATAAAGTTTTAAATGCTATCTTTGATGAAGAGATGTTAAGCACGAAACACATTCGTCAGGCTGGTAGATTGGGGTCAGCTGGAGGTGACAGTTCATCCATTCAGTATGCAGATTTTGTAACTGAGGTTCGAGATTATGTTATAGATGTCCACAGGGAAATTTTTAGACAGCATTGTGCAAAGCACCTAGAAATATCAACAATGCGATTATTGGATGACTGTCCACAATTTAATAGAAATGCAGTTAAACTTCTGACCCATGGAGGAGCCATGCTTGAACTTTGCCATGAGCTGCGTTTGCCTTTTGTGAACTGGATTATATCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATGTGTTTACAGAAGAGCAGTTGGACATTCATCACCAAACCGCTACCTTCAGGGAGATTTTGACATTATTGGTGGTACGTCAGCATTGACAGAGGCAGAAGTTATAAAGGTCACAAGGGACATAGTCACTTGTTTTTTCCATGCAGACTCATGTGACATTCATCTAAACCATGCTGACCTCCTGGATGCAATTTGGTCATGGATTGGAATCAAGGTAGAACAGAGACTTAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGTCCACAATCCTCAGAAAGGAAATCAAGATGGGTAGTGATAAGAAGGCAGCTTTTGCAGGAACTGGATTTAGTAGATGCTATGGTAAATAGGTTGCAGACAGTAGGTTTAAGATTCTGTGGATCTGCAGATCAGGCACTTCCCAGACTACGAGGAGCTCTTCCATCTGATAAACGTACATTCAAGGCACTTGATGAATTGTCTGAGCTTGTCAGCCTCTTGAGAATTTGGAGGATTGACAGAAATGTCTATATAGATGCATTAATGCCACCCACTGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTGAGGAAGGAGAACAGTCCTGGATCACTCTCTGAAGGTGTCTTGCTGGCAGTTGGTGGTCGATATGACTATTTGCTTCATCAGTTGTGGAGTAGTGACTATAAAGGAAATCCTCCTACTGGTGTGGGGACTAGCCTTGCACTAGAGACAATAATTCAGAATTGTCCTGTGGATTTTAAGCCCAATAGAAATGAAGCCAGCACCAATATTCTTGTCTGCTCAAGAGGAGGAGGTGGTCTGTTGGTGGAGCGCATGGAACTAGTTGCTGAATTGTGGGAGGAGAATTTAAAGGCTGAATTTGTTCCCACCCCTGATCCAAGTCTTACGGAGCAGTATGACTATGCCAATGAACATGATATCAAATGTCTCATCATTATCACTGATACAGATTTCTCCCTGGCAGATTCTGTTAAGGTTCGACACCTTGAACTTAAGAGGGAGAAAAATGTTGATAGGAAAAACTTAGTCAAGTTTCTATCGGAAGCTATGGCAACACAATTTAGAAACCCCTCCATTTGGATTTGA 3705 0.4162 MGHSSKKKKKHGGSGGRRNKTSKDHSSQFGSDDNDLLSEEITALCAIFQEECKIVPGSSPQIVIKLRPYSKDMGYEDLDVSALLLVRCLPGYPFKCPKLQITPENGLSDTDANQLLSLLHDQANLNAREGRVMIFNLVEAAQEFLSGIEPIAKSTESKLLLSTTESNEELFPKDMASSNKNRSFVYGFIDLFSGYGESWNWGFGIDEAAGKSSFLPPSKLDASKPHFVAREKKSDSKEKPLIMQELPAKLDTVGEVNEDSNNSVSLTHSSRSLVEDFVGNDNVGEKEYFIGDEYITEDNEGMYESESSESLSSASLPHHQAPLTVEKDLIMVHLLRLVCASKGTLADSLPQLATELCNLGIFSDSALDMASKPPSLFNKTFDCVFQKHLASSRISQFWKPSSDLGGSNTVSHSSRYLNDFEELRSLGHGGFGYVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSYGDSAWGSSTPVSSTFSYKAASSNDAIGHEKQLESTYLYIQMEYCPRTLRQVFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPAETNGVSIDGTGQVGTYFYTAPEIEQVWPKIDEKADMYSLGVVFFELWHPFRTAMERHVVLSDLKLKGELPPAWVAEFPEQESLLWRLMSPGPSDRPSATELLRNAFPPRMESELLDDILRTMQKSEDRSIYDKVLNAIFDEEMLSTKHIRQAGRLGSAGGDSSSIQYADFVTEVRDYVIDVHREIFRQHCAKHLEISTMRLLDDCPQFNRNAVKLLTHGGAMLELCHELRLPFVNWIISNQKSSFKRYEISCVYRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDIVTCFFHADSCDIHLNHADLLDAIWSWIGIKVEQRLKVAELLSMMGSLRPQSSERKSRWVVIRRQLLQELDLVDAMVNRLQTVGLRFCGSADQALPRLRGALPSDKRTFKALDELSELVSLLRIWRIDRNVYIDALMPPTESYHRDLFFQVYLRKENSPGSLSEGVLLAVGGRYDYLLHQLWSSDYKGNPPTGVGTSLALETIIQNCPVDFKPNRNEASTNILVCSRGGGGLLVERMELVAELWEENLKAEFVPTPDPSLTEQYDYANEHDIKCLIIITDTDFSLADSVKVRHLELKREKNVDRKNLVKFLSEAMATQFRNPSIWI* 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00671 1234 FunFam eIF-2-alpha kinase GCN2 782 1118 - -
Rops3g00671 1234 ProSiteProfiles RWD domain profile. 39 148 IPR006575 GO:0005515
Rops3g00671 1234 ProSiteProfiles Protein kinase domain profile. 420 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00671 1234 Pfam RWD domain 37 145 IPR006575 GO:0005515
Rops3g00671 1234 CDD STKc_EIF2AK4_GCN2_rpt2 413 719 - -
Rops3g00671 1234 MobiDBLite consensus disorder prediction 1 33 - -
Rops3g00671 1234 Pfam Histidyl-tRNA synthetase 868 1111 IPR041715 -
Rops3g00671 1234 FunFam eIF-2-alpha kinase GCN2 28 155 - -
Rops3g00671 1234 FunFam eIF-2-alpha kinase GCN2 540 733 - -
Rops3g00671 1234 Gene3D Bira Bifunctional Protein; Domain 2 783 1118 IPR045864 -
Rops3g00671 1234 ProSitePatterns Tyrosine protein kinases specific active-site signature. 575 587 IPR008266 GO:0004672|GO:0006468
Rops3g00671 1234 Gene3D Phosphorylase Kinase; domain 1 408 536 - -
Rops3g00671 1234 MobiDBLite consensus disorder prediction 1 16 - -
Rops3g00671 1234 Pfam Protein kinase domain 420 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00671 1234 ProSitePatterns Protein kinases ATP-binding region signature. 426 450 IPR017441 GO:0005524
Rops3g00671 1234 Gene3D - 1125 1225 IPR036621 -
Rops3g00671 1234 Gene3D Ubiquitin Conjugating Enzyme 26 154 IPR016135 -
Rops3g00671 1234 SUPERFAMILY Class II aaRS ABD-related 1130 1224 - -
Rops3g00671 1234 Gene3D Transferase(Phosphotransferase) domain 1 539 731 - -
Rops3g00671 1234 Pfam Anticodon binding domain of tRNAs 1129 1226 IPR024435 -
Rops3g00671 1234 SMART RWD2001b 39 148 IPR006575 GO:0005515
Rops3g00671 1234 FunFam Histidine--tRNA ligase, cytoplasmic 1125 1224 - -
Rops3g00671 1234 SUPERFAMILY UBC-like 34 145 IPR016135 -
Rops3g00671 1234 FunFam eIF-2-alpha kinase GCN2 408 536 - -
Rops3g00671 1234 SUPERFAMILY Protein kinase-like (PK-like) 416 727 IPR011009 -
Rops3g00671 1234 SUPERFAMILY Class II aaRS and biotin synthetases 789 1113 IPR045864 -
Rops3g00671 1234 PANTHER HISTIDYL-TRNA SYNTHETASE 779 1228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00671 Rops-Chr3 8178904 8209919 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00671 373 723 MAP Kinase Kinase Kinase AT1G63700 25.762 2.21e-21 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Rops3g00671 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00671 K16196 - gmx:100797996 2130.14