Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00660 ATGGATAACCACAAAACCCCTCCTCTTCCAGTTCCTTCCTCTACCAAAACAAATGTGAAACCAGAACCACAATCATCACCACCCTCTGCCTCTTCTAGCTTAAGCCATGACATGAACAGAATGCCTGAAAATCCGCCAAGAAATGGAGGCCTTAGGCGTGTTCATTCTGAGATTATCAGCCTCCCTGATGAAATCATCATCACCTTCCATAGAGTTTCAGATGATGACACCAGAGCCCCCACTTCTGCTGCAAACAACAATGTTGTTGCTAATGGTCCTGACCAGAGGCACCAACATAGCAACTCCATTAATGGCTCAACATCCCTCAACCAAGAGCCGCTTTCTGATGATTCTAGAAAATTAATGTCTGCTGCCAAGCTTGCTGAGCTTGCCAAAGCTGATCCCAAGCGTGCTAGAAGGATATGGGCTAATAGACAGTCTGCTGCAAGATCAAAAGAAAGGAGGAACCGTTACATTTCTGAGCTTGAAAACAGGGTGGAGATCTTGCAAGCTGAAGCAACATCCTTGTCTGCAAAATTAAACAGATTGTTGAGAAATATACATGACCTGGCTGCTCAGAACAATGAGATGAGGTTGCAGTTGCAAGTCATGCATCAACAAGTTCAACTGCAAACTGCATTGAACAATGCAATGAGAGAGGAAGTTGAGCATTTGAGAATTCTGACTGGGCAAGTGCCAAATGTACCTAGGAAGCCTGCTTCACTTCGAGGGGGGCAACAAAACAATTCCAACAATCAGGCCATGGAACCTCATTTAGCTGCACAACAGCTTCAACAGCTTCAAATTCGTTCTCGAAATCAGCAGCAGCAACCACAGCCACAGAACCAGGCAAAGCAGCAGCAGAAGAAGCAGGACCATAAAGAGGAAAAGTAG 894 0.453 MDNHKTPPLPVPSSTKTNVKPEPQSSPPSASSSLSHDMNRMPENPPRNGGLRRVHSEIISLPDEIIITFHRVSDDDTRAPTSAANNNVVANGPDQRHQHSNSINGSTSLNQEPLSDDSRKLMSAAKLAELAKADPKRARRIWANRQSAARSKERRNRYISELENRVEILQAEATSLSAKLNRLLRNIHDLAAQNNEMRLQLQVMHQQVQLQTALNNAMREEVEHLRILTGQVPNVPRKPASLRGGQQNNSNNQAMEPHLAAQQLQQLQIRSRNQQQQPQPQNQAKQQQKKQDHKEEK* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00660 297 MobiDBLite consensus disorder prediction 78 117 - -
Rops3g00660 297 MobiDBLite consensus disorder prediction 241 286 - -
Rops3g00660 297 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 134 197 IPR004827 GO:0003700|GO:0006355
Rops3g00660 297 CDD bZIP_plant_RF2 137 186 IPR044759 GO:0003700|GO:0006355
Rops3g00660 297 Pfam bZIP transcription factor 136 194 IPR004827 GO:0003700|GO:0006355
Rops3g00660 297 MobiDBLite consensus disorder prediction 1 51 - -
Rops3g00660 297 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 19 291 - -
Rops3g00660 297 SUPERFAMILY Leucine zipper domain 136 189 IPR046347 GO:0003700|GO:0006355
Rops3g00660 297 Gene3D - 135 189 - -
Rops3g00660 297 MobiDBLite consensus disorder prediction 230 297 - -
Rops3g00660 297 Coils Coil 152 200 - -
Rops3g00660 297 SMART brlzneu 132 196 IPR004827 GO:0003700|GO:0006355
Rops3g00660 297 MobiDBLite consensus disorder prediction 76 117 - -
Rops3g00660 297 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00660 Rops-Chr3 8086545 8087797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00660 1 271 bZIP Transcription Factor Family AT2G31370 40.116 6.53e-68 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops3g00660 bZIP_1 1.5e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00660 - - gmx:100810942 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00410 7 5165905 5170791 Rops3g00660 3 8086545 8087797 PCT