Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00658 ATGCCGCTTCCGATGAAATCAACGAGGCCGGTTCATGAAGGCGGCAAGGATTTTGACGAGTCAGTGACGCCATCGAACAACCTTTGGGTTGGGAATCTGGCGCCGGACGTTACGGACTCCGATCTGATGGACCTCTTCGCACAATACGGCGCACTCGACAGCGTAACCTCTTATTCCGCTCGCAGTTACGCTTTCGTGTATTTCAAGCGTGTAGAAGATGCCAAAGCCGCGAAGAACGCTCTTCAAGGCTTCTCTCTCCATGGCCACTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGACTTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGATTTCAAGTTATTCAGAGACCGAAATACTGCATGTGTTGAGTTTTTCAATTTGGATGATGCAACCCAGGCAATGAAAATCATGAATGGCAAACGTATAGGTGGGGAGTATATTCGTGTGGACTTCCTCCGGTCACATTCTACCAAAAAAGATCAGTTGCTTGATCATGGGCAGTTTCAAGGGAAAAGCTTGGGGCCTACTGATTCCTATTCTGGACAGAAGAGACCACTGCATTCACAAACTTTAATGGGGAGGAGGGGCGATGGTCAACCCAGTAATATTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATAGAGAGAATCAAGAGTTTTCCTTCAAGGAATTATTCATTTGTTGAATTTAGAAGTGTCGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGACTCAATACCTGGCAAAGATCACCCTGGCTTTTATCCCGGAAGTAATGGGCCAAGACCTGACATATTACTGAATGAGCATCCGTTTCGACCATTACAAATGGATTTATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTCCTGGACAGTTACCCCCTAGCAGTATTGTTAGTCCGAACATACCAATGCGGCCTTTTGGTCCTCAAGGTGGTCTTGAACCTGTTGTTTCTGGCCCGGAGTTTAATGAGATTAGCACACTCCACAAATTTCAGGATGGTAATTCCAAGAGTAAGATGGGTCCAAACTGGAAAAGGTCATCTCCTCCCGCACCAGGGATGCTTTCTTCTCCTGCACCAGGTGTTAGGCTTCCTGCAAGATCAGCCTCTGGAGCGTGGGATGTACTTGACATCAACCATATTCCAAGAGATTCTAAACGATCAAGGATAGATGGGACTTTGCCTGTTGATGATGCTCCATTTCCTCTAAGGAATATAGATGATCATGGGTTAGCTCTAGAACAAACATACGGGATCGATCCAGTTATTGATGGAGGTGGTTCTGGTTCATATGTAAATATTCAAGGGAAGAGTCACCTTGGTCCTGCTAACACAAGGATTACAGCTGGAGTACATGGTTCTGTCCAACCTGATATTGATCATGTATGGCGTGGAATTATTGCTAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGTGTCCCTATTGGGAAAGGGATTGCGACTGAACTTCCTGATGTTGTTGATTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACACTATGCTGATGCAATTGGTTTTGATCTTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTGCTTCATACACTGAATTCCTTCGCTATCTTAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCTTAGTTCCTCCTTCTGACTTCCTGACTAAAGTTTTAAAAGTCGCTGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCCATGCAACAACCATCGCATTTGCCTATACCATCAACTCAATATGTGCAGCAGATTCCTCCTTCACAGGGTGAATATGGTATGATTCCTGCAAAGGAGGAACAGGTTTTACCAATGGATTACAACAGATCATTGCATGGGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCTGCTACTGGTGGGCCCCCTTCAGCTCAGTCTGTGCCTCCGGATTATGCTCCTAATACTACTGCTTCTGGCTCCCAAGCTGGAGTTTCATTAACACCTGAGCTTATAGCAACTTTAGCTTCTTTACTCCCTGCAACTGCACAATCATCTGCCACTGATGGTGCCAAGCCAGCAGTAGGCTCCTCAGATGTGAAGCCTCCATTTCCTCCTGTGGCACCTAATGATGGAAACCAATCTCATTTATGGAAACAGGATCATCAAATTGCAGAGCAGTCTATTCATCCTCCTCAACAGTTGAGGAGTATGTATAACATTCACAATGCTCATTATCAGTCTTATCCACCAGCATTAGCTCCTGGTCATTCTGCCCAAGTGGTCCGTGGCAGTTCTCATATACAAGATACCGCTATCGGCCTGCAGCAGCAAGCTGCTGTTTCATCGAGTCACATGTCTAATTTTGCAATACCTACTCAAAGTGGACAGGTAGGTGTATCCCCTCATGTCAGTCAGCAGTATCAGGTCGAAGTCTCCCCCAGTACTCAGAAAGGCTTTGGAGTGATGCAGGGAACTGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGCTGTTCCAGCAACCTAATAATTCTATTGCCTTATCTAATCAAGTTAACAGTGCTAATCCTTCACAGCAACAAACTGTCCTGCCATATACAGTGGACCCAATAAACTCAAACCCTCCCAATCAACAACTTCCTGTCTTTGGAGTTGGTCAAGGCACATCGGAAGGGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTCCTTCAAATACAGCAGCAGCAGCAAACCCAAGGAGGACATGGGCCAGGAATCCAACAATGA 3018 0.4483 MPLPMKSTRPVHEGGKDFDESVTPSNNLWVGNLAPDVTDSDLMDLFAQYGALDSVTSYSARSYAFVYFKRVEDAKAAKNALQGFSLHGHSLKIEFARPAKPCKQLWVGGISPAVTKEDLEAEFRKFGKIEDFKLFRDRNTACVEFFNLDDATQAMKIMNGKRIGGEYIRVDFLRSHSTKKDQLLDHGQFQGKSLGPTDSYSGQKRPLHSQTLMGRRGDGQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDSIPGKDHPGFYPGSNGPRPDILLNEHPFRPLQMDLFGHNRPMVPNNFPGQLPPSSIVSPNIPMRPFGPQGGLEPVVSGPEFNEISTLHKFQDGNSKSKMGPNWKRSSPPAPGMLSSPAPGVRLPARSASGAWDVLDINHIPRDSKRSRIDGTLPVDDAPFPLRNIDDHGLALEQTYGIDPVIDGGGSGSYVNIQGKSHLGPANTRITAGVHGSVQPDIDHVWRGIIAKGGTPVCRARCVPIGKGIATELPDVVDCSARTGLDILTKHYADAIGFDLVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPPVPSSAPMQQPSHLPIPSTQYVQQIPPSQGEYGMIPAKEEQVLPMDYNRSLHGDSKLPAKPVYPATGGPPSAQSVPPDYAPNTTASGSQAGVSLTPELIATLASLLPATAQSSATDGAKPAVGSSDVKPPFPPVAPNDGNQSHLWKQDHQIAEQSIHPPQQLRSMYNIHNAHYQSYPPALAPGHSAQVVRGSSHIQDTAIGLQQQAAVSSSHMSNFAIPTQSGQVGVSPHVSQQYQVEVSPSTQKGFGVMQGTDASVLYNSQAFQQPNNNSQLFQQPNNSIALSNQVNSANPSQQQTVLPYTVDPINSNPPNQQLPVFGVGQGTSEGEADKNQRYQSTLQFAANLLLQIQQQQQTQGGHGPGIQQ* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00658 1005 Gene3D - 213 304 IPR012677 -
Rops3g00658 1005 CDD RRM_SF 105 171 - -
Rops3g00658 1005 Gene3D - 100 208 IPR012677 -
Rops3g00658 1005 MobiDBLite consensus disorder prediction 1 20 - -
Rops3g00658 1005 FunFam Flowering time control protein FPA isoform A 101 215 - -
Rops3g00658 1005 Gene3D - 10 99 IPR012677 -
Rops3g00658 1005 SUPERFAMILY RNA-binding domain, RBD 100 180 IPR035979 GO:0003676
Rops3g00658 1005 SMART rrm1_1 104 171 IPR000504 GO:0003723
Rops3g00658 1005 SMART rrm1_1 27 94 IPR000504 GO:0003723
Rops3g00658 1005 SMART rrm1_1 224 292 IPR000504 GO:0003723
Rops3g00658 1005 SUPERFAMILY RNA-binding domain, RBD 18 100 IPR035979 GO:0003676
Rops3g00658 1005 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 175 IPR000504 GO:0003723
Rops3g00658 1005 FunFam flowering time control protein FPA 216 309 - -
Rops3g00658 1005 CDD RRM_SF 28 94 - -
Rops3g00658 1005 MobiDBLite consensus disorder prediction 689 729 - -
Rops3g00658 1005 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Rops3g00658 1005 MobiDBLite consensus disorder prediction 388 411 - -
Rops3g00658 1005 MobiDBLite consensus disorder prediction 754 782 - -
Rops3g00658 1005 FunFam Flowering time control protein FPA 18 100 - -
Rops3g00658 1005 PANTHER RNA RECOGNITION MOTIF-CONTAINING 23 96 - -
Rops3g00658 1005 SUPERFAMILY RNA-binding domain, RBD 218 304 IPR035979 GO:0003676
Rops3g00658 1005 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 289 IPR000504 GO:0003723
Rops3g00658 1005 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Rops3g00658 1005 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 92 IPR000504 GO:0003723
Rops3g00658 1005 Pfam SPOC domain 513 630 IPR012921 -
Rops3g00658 1005 MobiDBLite consensus disorder prediction 185 205 - -
Rops3g00658 1005 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 296 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00658 Rops-Chr3 8061247 8073489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00658 27 285 Eukaryotic Initiation Factors Gene Family AT2G36660 23.488 1.32e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00658 - - gmx:100777570 1721.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00409 7 5155351 5164015 Rops3g00658 3 8061247 8073489 PCT