Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops3g00658 | ATGCCGCTTCCGATGAAATCAACGAGGCCGGTTCATGAAGGCGGCAAGGATTTTGACGAGTCAGTGACGCCATCGAACAACCTTTGGGTTGGGAATCTGGCGCCGGACGTTACGGACTCCGATCTGATGGACCTCTTCGCACAATACGGCGCACTCGACAGCGTAACCTCTTATTCCGCTCGCAGTTACGCTTTCGTGTATTTCAAGCGTGTAGAAGATGCCAAAGCCGCGAAGAACGCTCTTCAAGGCTTCTCTCTCCATGGCCACTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGACTTGGAAGCTGAATTTCGTAAATTTGGTAAAATTGAGGATTTCAAGTTATTCAGAGACCGAAATACTGCATGTGTTGAGTTTTTCAATTTGGATGATGCAACCCAGGCAATGAAAATCATGAATGGCAAACGTATAGGTGGGGAGTATATTCGTGTGGACTTCCTCCGGTCACATTCTACCAAAAAAGATCAGTTGCTTGATCATGGGCAGTTTCAAGGGAAAAGCTTGGGGCCTACTGATTCCTATTCTGGACAGAAGAGACCACTGCATTCACAAACTTTAATGGGGAGGAGGGGCGATGGTCAACCCAGTAATATTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATAGAGAGAATCAAGAGTTTTCCTTCAAGGAATTATTCATTTGTTGAATTTAGAAGTGTCGATGAAGCTCGACGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGACTCAATACCTGGCAAAGATCACCCTGGCTTTTATCCCGGAAGTAATGGGCCAAGACCTGACATATTACTGAATGAGCATCCGTTTCGACCATTACAAATGGATTTATTTGGTCATAATCGTCCAATGGTTCCAAATAATTTTCCTGGACAGTTACCCCCTAGCAGTATTGTTAGTCCGAACATACCAATGCGGCCTTTTGGTCCTCAAGGTGGTCTTGAACCTGTTGTTTCTGGCCCGGAGTTTAATGAGATTAGCACACTCCACAAATTTCAGGATGGTAATTCCAAGAGTAAGATGGGTCCAAACTGGAAAAGGTCATCTCCTCCCGCACCAGGGATGCTTTCTTCTCCTGCACCAGGTGTTAGGCTTCCTGCAAGATCAGCCTCTGGAGCGTGGGATGTACTTGACATCAACCATATTCCAAGAGATTCTAAACGATCAAGGATAGATGGGACTTTGCCTGTTGATGATGCTCCATTTCCTCTAAGGAATATAGATGATCATGGGTTAGCTCTAGAACAAACATACGGGATCGATCCAGTTATTGATGGAGGTGGTTCTGGTTCATATGTAAATATTCAAGGGAAGAGTCACCTTGGTCCTGCTAACACAAGGATTACAGCTGGAGTACATGGTTCTGTCCAACCTGATATTGATCATGTATGGCGTGGAATTATTGCTAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGTGTCCCTATTGGGAAAGGGATTGCGACTGAACTTCCTGATGTTGTTGATTGCTCAGCTAGGACGGGATTGGATATACTCACAAAACACTATGCTGATGCAATTGGTTTTGATCTTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTGCTTCATACACTGAATTCCTTCGCTATCTTAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCTTAGTTCCTCCTTCTGACTTCCTGACTAAAGTTTTAAAAGTCGCTGGACCTGAACGTCTATATGGTGTGGTTCTTAAGTTTCCACCAGTGCCAAGTAGTGCACCCATGCAACAACCATCGCATTTGCCTATACCATCAACTCAATATGTGCAGCAGATTCCTCCTTCACAGGGTGAATATGGTATGATTCCTGCAAAGGAGGAACAGGTTTTACCAATGGATTACAACAGATCATTGCATGGGGATTCTAAGCTTCCTGCTAAACCAGTCTATCCTGCTACTGGTGGGCCCCCTTCAGCTCAGTCTGTGCCTCCGGATTATGCTCCTAATACTACTGCTTCTGGCTCCCAAGCTGGAGTTTCATTAACACCTGAGCTTATAGCAACTTTAGCTTCTTTACTCCCTGCAACTGCACAATCATCTGCCACTGATGGTGCCAAGCCAGCAGTAGGCTCCTCAGATGTGAAGCCTCCATTTCCTCCTGTGGCACCTAATGATGGAAACCAATCTCATTTATGGAAACAGGATCATCAAATTGCAGAGCAGTCTATTCATCCTCCTCAACAGTTGAGGAGTATGTATAACATTCACAATGCTCATTATCAGTCTTATCCACCAGCATTAGCTCCTGGTCATTCTGCCCAAGTGGTCCGTGGCAGTTCTCATATACAAGATACCGCTATCGGCCTGCAGCAGCAAGCTGCTGTTTCATCGAGTCACATGTCTAATTTTGCAATACCTACTCAAAGTGGACAGGTAGGTGTATCCCCTCATGTCAGTCAGCAGTATCAGGTCGAAGTCTCCCCCAGTACTCAGAAAGGCTTTGGAGTGATGCAGGGAACTGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATTCTCAGCTGTTCCAGCAACCTAATAATTCTATTGCCTTATCTAATCAAGTTAACAGTGCTAATCCTTCACAGCAACAAACTGTCCTGCCATATACAGTGGACCCAATAAACTCAAACCCTCCCAATCAACAACTTCCTGTCTTTGGAGTTGGTCAAGGCACATCGGAAGGGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTCCTTCAAATACAGCAGCAGCAGCAAACCCAAGGAGGACATGGGCCAGGAATCCAACAATGA | 3018 | 0.4483 | MPLPMKSTRPVHEGGKDFDESVTPSNNLWVGNLAPDVTDSDLMDLFAQYGALDSVTSYSARSYAFVYFKRVEDAKAAKNALQGFSLHGHSLKIEFARPAKPCKQLWVGGISPAVTKEDLEAEFRKFGKIEDFKLFRDRNTACVEFFNLDDATQAMKIMNGKRIGGEYIRVDFLRSHSTKKDQLLDHGQFQGKSLGPTDSYSGQKRPLHSQTLMGRRGDGQPSNILWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSDSIPGKDHPGFYPGSNGPRPDILLNEHPFRPLQMDLFGHNRPMVPNNFPGQLPPSSIVSPNIPMRPFGPQGGLEPVVSGPEFNEISTLHKFQDGNSKSKMGPNWKRSSPPAPGMLSSPAPGVRLPARSASGAWDVLDINHIPRDSKRSRIDGTLPVDDAPFPLRNIDDHGLALEQTYGIDPVIDGGGSGSYVNIQGKSHLGPANTRITAGVHGSVQPDIDHVWRGIIAKGGTPVCRARCVPIGKGIATELPDVVDCSARTGLDILTKHYADAIGFDLVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPPVPSSAPMQQPSHLPIPSTQYVQQIPPSQGEYGMIPAKEEQVLPMDYNRSLHGDSKLPAKPVYPATGGPPSAQSVPPDYAPNTTASGSQAGVSLTPELIATLASLLPATAQSSATDGAKPAVGSSDVKPPFPPVAPNDGNQSHLWKQDHQIAEQSIHPPQQLRSMYNIHNAHYQSYPPALAPGHSAQVVRGSSHIQDTAIGLQQQAAVSSSHMSNFAIPTQSGQVGVSPHVSQQYQVEVSPSTQKGFGVMQGTDASVLYNSQAFQQPNNNSQLFQQPNNSIALSNQVNSANPSQQQTVLPYTVDPINSNPPNQQLPVFGVGQGTSEGEADKNQRYQSTLQFAANLLLQIQQQQQTQGGHGPGIQQ* | 1006 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops3g00658 | 1005 | Gene3D | - | 213 | 304 | IPR012677 | - | |
Rops3g00658 | 1005 | CDD | RRM_SF | 105 | 171 | - | - | |
Rops3g00658 | 1005 | Gene3D | - | 100 | 208 | IPR012677 | - | |
Rops3g00658 | 1005 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Rops3g00658 | 1005 | FunFam | Flowering time control protein FPA isoform A | 101 | 215 | - | - | |
Rops3g00658 | 1005 | Gene3D | - | 10 | 99 | IPR012677 | - | |
Rops3g00658 | 1005 | SUPERFAMILY | RNA-binding domain, RBD | 100 | 180 | IPR035979 | GO:0003676 | |
Rops3g00658 | 1005 | SMART | rrm1_1 | 104 | 171 | IPR000504 | GO:0003723 | |
Rops3g00658 | 1005 | SMART | rrm1_1 | 27 | 94 | IPR000504 | GO:0003723 | |
Rops3g00658 | 1005 | SMART | rrm1_1 | 224 | 292 | IPR000504 | GO:0003723 | |
Rops3g00658 | 1005 | SUPERFAMILY | RNA-binding domain, RBD | 18 | 100 | IPR035979 | GO:0003676 | |
Rops3g00658 | 1005 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 103 | 175 | IPR000504 | GO:0003723 | |
Rops3g00658 | 1005 | FunFam | flowering time control protein FPA | 216 | 309 | - | - | |
Rops3g00658 | 1005 | CDD | RRM_SF | 28 | 94 | - | - | |
Rops3g00658 | 1005 | MobiDBLite | consensus disorder prediction | 689 | 729 | - | - | |
Rops3g00658 | 1005 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 26 | 98 | IPR000504 | GO:0003723 | |
Rops3g00658 | 1005 | MobiDBLite | consensus disorder prediction | 388 | 411 | - | - | |
Rops3g00658 | 1005 | MobiDBLite | consensus disorder prediction | 754 | 782 | - | - | |
Rops3g00658 | 1005 | FunFam | Flowering time control protein FPA | 18 | 100 | - | - | |
Rops3g00658 | 1005 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 23 | 96 | - | - | |
Rops3g00658 | 1005 | SUPERFAMILY | RNA-binding domain, RBD | 218 | 304 | IPR035979 | GO:0003676 | |
Rops3g00658 | 1005 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 235 | 289 | IPR000504 | GO:0003723 | |
Rops3g00658 | 1005 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 105 | 168 | IPR000504 | GO:0003723 | |
Rops3g00658 | 1005 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 92 | IPR000504 | GO:0003723 | |
Rops3g00658 | 1005 | Pfam | SPOC domain | 513 | 630 | IPR012921 | - | |
Rops3g00658 | 1005 | MobiDBLite | consensus disorder prediction | 185 | 205 | - | - | |
Rops3g00658 | 1005 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 223 | 296 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops3g00658 | Rops-Chr3 | 8061247 | 8073489 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops3g00658 | 27 | 285 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 23.488 | 1.32e-11 | 66.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops3g00658 | - | - | gmx:100777570 | 1721.83 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops7g00409 | 7 | 5155351 | 5164015 | Rops3g00658 | 3 | 8061247 | 8073489 | PCT |