Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00643 ATGGAAAACCACTTATTCCCCAAGGGAAAAGGCTATTGGACACCATTGGATGGTGGAATGAAAAATTCAGCTCCTGAGGATATGTTTAACAACTTCTCCGAGCTCATGAACTTTGATACTTATGCTGGTTGGTGCAATGGTCCATCGATGACTGATCAGAGTTTGGCTAATGGGCTTTCATCATTTGCCTCAATACCATATCCATCACATGATGGATTGAATTTACTGGAACACAGCAATGGTCCATTCTTTATGACAGAAGTTAGTGGAAATTACAATGCTATGGAAAACTCCCTTAATTATGGGGACAGAGTTGTATTACAACAAGTGGACAACCAACCTGAGTTCTCAGATGATGCAAATGATACAAATAACTTTGATTCAAAACAAAAACAAAATGGCTCATTTCAGCTACTTAATACCTCAGACATGGACAATTGCATAATTTCCGGATCATCCGGTTGGTCTCTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGTGAGGGAATATTGGCACAAGTTTGGGTTCCCATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAGCAACCTTATTTGCTAGACCAAAAGCTTGCAGGGTATCGTGAAGTGTCAAGGACATTTACATTTTCTGTAGAAGGAAAAGCAGGCTCTTGTCCAGGGCTTCCTGGTCGCGTGTTTATCTCTCATGTTCCTGAATGGACCTCCAATGTTGGCTACTACCACAAAACTGAGTACTTGAGGTTGGAGCATGCAATTAATCATGAGGTTTGTGGATCAATTGCTCTTCCCATATCTGATCCACACTCTGAAGTGCCATGTAGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCCTAATTTTGACAGAGAATTAGAAATTGTTTCTCATGCACTCCAGCTTGTAAATTTAAGGACTATTATGCCTCCTCGACTTCTTCCTCAGTGTCTGTCAAATAACAAAAGAGCTGCTTTAACAGAGATAATTGATGTGTTACGAGCTGTGTGTCATGCTCACAGATTGCCACTGGCACTGACATGGATTCCCTGTTGTTACAGTGAGGGAATGGGAGATGAAACTGAGAGAATACAAATTAAAGAGGGCCATACAAGTTATAATGAAAAATATATACTATGTATTGAAGAATCAGCTTGCTATATAAATGATAAAATGATAGGAGGATTTGTTCATGCATGCACTGAACATCATCTTCAGGAAGGGCAAGGTATAGCTGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGGCTTATGATGTTAATGAATATCCCCTTGTTCATCATGCACGCAAATATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACATATACTAATGATGATGATTATATATTAGAATTCTTTCTGCCTGTTAATATGACAGGTTGTTCAGAACAACAACTTTTATTGGACAATCTCTCAGGTACCATGCAGAGAATTTGTAGGAGTTTAAGGACGGTTTCAGATGCTGAATTAACAGGCATAGAAGGCTCCCAAGTTGGGTTTCAAAAGGAAAAGGTCCCAAGTTTTTTTCCTGGGTCCAGTAGAAACTCTCAGATTGCATTAATAAGTGGTGACCATGATTCAGTCCAGAAGATGTCCTTGAAGGCAACTAACCTGAGAGATAATGGAATTGACGCTTCTCATAGCCAGGCAATGAATGGATCAAGAAAGCAGGTTGAGAGAAAGAGAAGTACAGTGGAGAAGAATGTTGGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGAATGCTGCAAAAAGCATTGGAGTTTGCCCCACAACTCTGAAAAGGATATGCAGACAACATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCATTAAAGAAAATACAGACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGAGGGCTCAAGTTTGATCCCTATATTGGGGGGTTGGTGGCAGGAGGATCAATCATCCAAGAAATTGATGCACATAATGGTCTTCTGTTCCCTGAGAAGAATACTGTAAAAGACCCTGAGCCTGGAACACAAGGTGAGAACTCAGCCATTAAGTTGGAGGATGATGGTGTTTGTTTGGTGGGAAACCACAGGCTTGTGCAATCAAGAAGTGTGCTTATCTCTAATTCCTATGAGGGAGAACTGAAGAAGAAAGACAAAGCTTCTTCTGTTGATTGTAGTAAAGACTCAAAATCAGTGGCCATGGATGATGGATCATGCCAGACAGCATGTCTTTGGACCAAGGCTCAGGATTGTCCTGAACAAACCTCTCTGAGTACTGTTCTTGAAAAAGAAAGGGATCAATGGGGTTTGAACATGACCAGTTTGGGTGTAGAAAATTCTATCCGTGATATTGTCTCTCATAGTTCAATCTCCTTGATCGAACTTGGTGTGGATGGGGGCAATGTAGGTGAAGAACATAACCACCCTACTTCTTCAAGCATGACAGAATCTTCCAATGGCTCTGGCTCAATGATTCATGGCAGTTCATCATGCTGTCAAAGCTTTGAGAACCATAAGCATTCTAAAGTGAAATCAACTTGTGTTGATAGTGGTTCAAAACTTGTTGTCAAAGTTACCTATAGAGGAGATACTATTCGTTTCAAGTTTGATCCTTCTGCAGGTTGTTTTCAACTATATGAAGAAGTTGCAACAAGGTTCAAATTACAAAATGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATATTGGTGAATGACTCAGATTTGCAAGAATGTGTAGAAATTTTGGGTGATATTGGCACACATTGTGTGAAGTTTCTTGTTCGTGATATGCCTACATGTGGCAGTAACAGTTGCTTCTTGTCAGACAGCTCATAG 2922 0.4035 MENHLFPKGKGYWTPLDGGMKNSAPEDMFNNFSELMNFDTYAGWCNGPSMTDQSLANGLSSFASIPYPSHDGLNLLEHSNGPFFMTEVSGNYNAMENSLNYGDRVVLQQVDNQPEFSDDANDTNNFDSKQKQNGSFQLLNTSDMDNCIISGSSGWSLDERMLRALSFFKESAGEGILAQVWVPIKHGDEFILSTSEQPYLLDQKLAGYREVSRTFTFSVEGKAGSCPGLPGRVFISHVPEWTSNVGYYHKTEYLRLEHAINHEVCGSIALPISDPHSEVPCSAVLELVTTKEKPNFDRELEIVSHALQLVNLRTIMPPRLLPQCLSNNKRAALTEIIDVLRAVCHAHRLPLALTWIPCCYSEGMGDETERIQIKEGHTSYNEKYILCIEESACYINDKMIGGFVHACTEHHLQEGQGIAGKALQSNHPFFYTDVKAYDVNEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGCSEQQLLLDNLSGTMQRICRSLRTVSDAELTGIEGSQVGFQKEKVPSFFPGSSRNSQIALISGDHDSVQKMSLKATNLRDNGIDASHSQAMNGSRKQVERKRSTVEKNVGLSVLQQYFSGSLKNAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYIGGLVAGGSIIQEIDAHNGLLFPEKNTVKDPEPGTQGENSAIKLEDDGVCLVGNHRLVQSRSVLISNSYEGELKKKDKASSVDCSKDSKSVAMDDGSCQTACLWTKAQDCPEQTSLSTVLEKERDQWGLNMTSLGVENSIRDIVSHSSISLIELGVDGGNVGEEHNHPTSSSMTESSNGSGSMIHGSSSCCQSFENHKHSKVKSTCVDSGSKLVVKVTYRGDTIRFKFDPSAGCFQLYEEVATRFKLQNGSFQLKYLDDEEEWVILVNDSDLQECVEILGDIGTHCVKFLVRDMPTCGSNSCFLSDSS* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00643 973 Gene3D - 874 953 - -
Rops3g00643 973 ProSiteProfiles RWP-RK domain profile. 571 659 IPR003035 -
Rops3g00643 973 MobiDBLite consensus disorder prediction 566 585 - -
Rops3g00643 973 PANTHER PROTEIN NLP8 109 969 IPR045012 GO:0003700
Rops3g00643 973 MobiDBLite consensus disorder prediction 829 849 - -
Rops3g00643 973 Pfam RWP-RK domain 591 639 IPR003035 -
Rops3g00643 973 CDD PB1_NLP 878 958 IPR034891 -
Rops3g00643 973 SMART PB1_new 877 959 IPR000270 GO:0005515
Rops3g00643 973 MobiDBLite consensus disorder prediction 825 849 - -
Rops3g00643 973 ProSiteProfiles PB1 domain profile. 877 959 IPR000270 GO:0005515
Rops3g00643 973 SUPERFAMILY CAD & PB1 domains 872 959 - -
Rops3g00643 973 Pfam PB1 domain 879 958 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00643 Rops-Chr3 7912130 7918120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00643 156 966 NLP Transcription Factor Family AT3G59580 51.555 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Rops3g00643 PB1 8.7e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00643 - - aprc:113864503 1530.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops7g00393 7 5034239 5041643 Rops3g00643 3 7912130 7918120 PCT