Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00635 ATGGGTAACTCACTGCAACGCCGTAGTGAAGGACAGGGGAATAAGGTCGTCGGCTTGATTGAAGAGGAAGCAACATGCGAACTTTGCATCCAGCCCTTATCTCCAGACACGCTTTTCAAGAACAACGAGCGATGCGTGCACCCCTTTTGCATGGACTGCGTAGCCAAATACATAGAGGTGAAGGTAGACGAGAGCGTGGGGAACATCCCATGTCCTGCCTTGAACTGCAACCGACTGTTAGACCCCGTGTTTTGCAGGTCTATAATCTCAAAACAAGTGTTTGATAAATGGTGTGATGCTCTTTGCACTTCAACAGTTTTGGAGTTCCAGCACAGATCATATTGCCCATATCAAGATTGCTTTGCACTGGTTACCAGCGAGTGTGAAGCCAAGAAAGTGTTGTGCCCCAATTGCAAGAGGCACTTCTGCTTCAAGTGCCAGACACCTTGGCATGCAAGGAACAGGTGCCAAGAGAGTGGACAAGTAAGGGATAGGAATGATGTTCTGTTTAGAAAACTCATGAAGAGAAAAGGATGGAGGAGATGTTATAGATGTGGTCAATGTGTTGAACGTGTTGGAGGTTGTGAAGCCATTCGTTGCAGCGACGGTGCCATCTACTTCATGTATTACTACTCAAACGTTAAAACCTCCCACTCTTCGCTACGTATTCAGGAACAACAAAGCATTGCAAGTTAA 696 0.4641 MGNSLQRRSEGQGNKVVGLIEEEATCELCIQPLSPDTLFKNNERCVHPFCMDCVAKYIEVKVDESVGNIPCPALNCNRLLDPVFCRSIISKQVFDKWCDALCTSTVLEFQHRSYCPYQDCFALVTSECEAKKVLCPNCKRHFCFKCQTPWHARNRCQESGQVRDRNDVLFRKLMKRKGWRRCYRCGQCVERVGGCEAIRCSDGAIYFMYYYSNVKTSHSSLRIQEQQSIAS* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00635 231 ProSiteProfiles Zinc finger RING-type profile. 26 75 IPR001841 -
Rops3g00635 231 SUPERFAMILY RING/U-box 95 158 - -
Rops3g00635 231 SMART ibrneu5 95 156 IPR002867 GO:0008270
Rops3g00635 231 ProSiteProfiles TRIAD supradomain profile. 22 231 IPR044066 -
Rops3g00635 231 SUPERFAMILY RING/U-box 22 104 - -
Rops3g00635 231 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Rops3g00635 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 110 IPR013083 -
Rops3g00635 231 SUPERFAMILY RING/U-box 165 200 - -
Rops3g00635 231 FunFam RBR-type E3 ubiquitin transferase 21 108 - -
Rops3g00635 231 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 23 211 IPR031127 GO:0004842|GO:0016567
Rops3g00635 231 Pfam IBR domain, a half RING-finger domain 96 156 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00635 Rops-Chr3 7842689 7846134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00635 22 200 C3H Transcription Factor Family AT2G19610 26.020 2.44e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00635 K11975 - pop:18100148 242.276