Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00634 ATGGGTAACTCATTGCAACGCCAAACTGATGAAGAAGGGGATGAGGTCATTGGCTTGATTGAAGAGGAGGCAACATGCGAGCTTTGCATCGAGCCCTTTTCTCTAGACACACTTTTCAAGAACAACAAGCTATGCGTGCACCCCTTTTGCATGGACTGCATGGTCAAATACATAGATGTGAAGGTAGGAGAGAACGTAGGGAACATCCCATGTCCTGCATTGAACTGCAAGCAACAGTTAGACCCCTTGTTTTGCAGGTCAATAATCTCAAAAGAATTGTTTGATAAATGGTGTGATGTTCTTTGCACTTCAACAGTTTTGGAGTTCCAACACCGTTCATATTGCCCTTATCAAGGTTGCTCAGCCTTGGTTACCAGCGAGTGTGAAGCTGAGAAAGTGTTGTGCCCAAATTGCAAGTTGTACTTTTGCTTCAAGTGCCAAACTCCTTGGCATGTAGGGTACAAGTGCCAAGAGAGTGGAGAATTCAGGGATAGGAATGATGTTCTATTTGGAGAACTCATGGAGAGAGAAGGATGGAGTAGATGTTATAGATGTGGTCAATGTGTTGAGCGTGTTGGAGATGTGGTGCTTATTATTGCGCTGTATGTGGAGGACGAGCTCACATTGGTCATTGCTTCATCAACAATCCATTTTTATGTATTTTTGAATGGGTAG 675 0.4356 MGNSLQRQTDEEGDEVIGLIEEEATCELCIEPFSLDTLFKNNKLCVHPFCMDCMVKYIDVKVGENVGNIPCPALNCKQQLDPLFCRSIISKELFDKWCDVLCTSTVLEFQHRSYCPYQGCSALVTSECEAEKVLCPNCKLYFCFKCQTPWHVGYKCQESGEFRDRNDVLFGELMEREGWSRCYRCGQCVERVGDVVLIIALYVEDELTLVIASSTIHFYVFLNG* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00634 224 ProSiteProfiles Zinc finger RING-type profile. 26 75 IPR001841 -
Rops3g00634 224 SMART ibrneu5 95 156 IPR002867 GO:0008270
Rops3g00634 224 ProSiteProfiles TRIAD supradomain profile. 22 224 IPR044066 -
Rops3g00634 224 SUPERFAMILY RING/U-box 22 104 - -
Rops3g00634 224 SUPERFAMILY RING/U-box 95 158 - -
Rops3g00634 224 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Rops3g00634 224 FunFam RBR-type E3 ubiquitin transferase 21 108 - -
Rops3g00634 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 107 IPR013083 -
Rops3g00634 224 Pfam IBR domain, a half RING-finger domain 96 156 IPR002867 GO:0008270
Rops3g00634 224 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 22 193 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00634 Rops-Chr3 7839067 7840067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00634 22 193 C3H Transcription Factor Family AT2G19610 24.194 3.52e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00634 K11975 - pop:18100148 238.81