Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00626 ATGGATGATCAGCAGGACAACCCTTCCTTCTTCACTATCATCAAGAAAGGCTGCAACACCAACCGCATGAAAGTCCCACCGAAGTTTCTGAAGTATTTGAATGAAGACTTCTCAAGCAATGCAATTCTTATAGGCTCTTCTGGTAACAAGTGGCAAGTAACAATTTTTAAGGAAGGAAATGACATGTATATGCAAAATGGTTGGCCACAATTTCTGACAGACAACTCAGTGGTGCCTGATGAGTTCTTGCTTTTTACATATGATGGAGAGTACTGCTTCCGGGTGCAGATTTTTAGTAGGAATGGATGTGAGAGGCCATATTTAAAAAGAACAAGACAAGAAGATGCTGCCACTCCGAGCTTGGCAAGAACAAAGAAGGGTAGACCAAGAAAAACTTCTGCTGGTTCATCACACTTCCATGAATCGAAGCCTTGTAAAGAAGGTCTGCCTCTCAGCAACAAAGGCTCACATCCTAAGGATCACTTCTCAAAGCCTAAGATTAAAACTGAAATTGGAAGATCAGAAGCTTGCAAATTGCCTGAGTCTTTTACCTCTGACAATCCTTATTTCAAGCACCTCATGACAAAATCAAATGTGGAAAATCATTTCTCATTGCCTGTTGCTACTGAGTTTGCCAGAAAGTATATTCCTGAAGCTGTAAAAAAGATCATCCTTAAGAATTGGGAAGGAAAATATTGGGAAGTGACAGTGGCTTGTATAGGTACTCAAAACAAAAGGTATGCTCAGTTTACAACAGGATGGGGGAAATTTGCTCGTGATAACAAGCTCAGGAGAGGTGACACTTGCATATTTGAACTTGAAGACAGAAACCATTTGATGAAGGTTCACATATTCAGATGTGCACCAAATTAG 873 0.4032 MDDQQDNPSFFTIIKKGCNTNRMKVPPKFLKYLNEDFSSNAILIGSSGNKWQVTIFKEGNDMYMQNGWPQFLTDNSVVPDEFLLFTYDGEYCFRVQIFSRNGCERPYLKRTRQEDAATPSLARTKKGRPRKTSAGSSHFHESKPCKEGLPLSNKGSHPKDHFSKPKIKTEIGRSEACKLPESFTSDNPYFKHLMTKSNVENHFSLPVATEFARKYIPEAVKKIILKNWEGKYWEVTVACIGTQNKRYAQFTTGWGKFARDNKLRRGDTCIFELEDRNHLMKVHIFRCAPN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00626 290 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
Rops3g00626 290 Pfam B3 DNA binding domain 190 286 IPR003340 GO:0003677
Rops3g00626 290 MobiDBLite consensus disorder prediction 134 165 - -
Rops3g00626 290 CDD B3_DNA 8 99 IPR003340 GO:0003677
Rops3g00626 290 CDD B3_DNA 188 286 IPR003340 GO:0003677
Rops3g00626 290 SMART B3_2 190 288 IPR003340 GO:0003677
Rops3g00626 290 SMART B3_2 10 101 IPR003340 GO:0003677
Rops3g00626 290 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Rops3g00626 290 PANTHER B3 DOMAIN-CONTAINING 5 283 - -
Rops3g00626 290 MobiDBLite consensus disorder prediction 110 165 - -
Rops3g00626 290 Gene3D - 2 103 IPR015300 -
Rops3g00626 290 ProSiteProfiles B3 DNA-binding domain profile. 190 288 IPR003340 GO:0003677
Rops3g00626 290 Gene3D - 168 288 IPR015300 -
Rops3g00626 290 SUPERFAMILY DNA-binding pseudobarrel domain 4 103 IPR015300 -
Rops3g00626 290 SUPERFAMILY DNA-binding pseudobarrel domain 183 286 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00626 Rops-Chr3 7771365 7773078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00626 13 287 B3 DNA Binding Superfamily AT3G18990 23.582 5.91e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops3g00626 B3 1.8e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00626 3 7771365 7773078 Rops3g00626 3 7771365 7773078 ECH