Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00625 ATGCAGCGTCCTTCTTTTCACAGGCTTGTTCTACCCTTCACTCTTCAAGCCAGGAAACTGAGTCTTCCAGATAGTTTTATGAGGAAATATGGGGGTGAGCTTTCTACAATTGCTACCCTCTCTGTTCCTGATGGTAGCGTCTGGCGTATAGGATTAAAAAAGGCAGACAACAAATTTTGGTTCCATGATGGTTGGCAAGAATTTGTTCAACGCTATTCCATTGGTGTTGGATACTTGTTGGTGTTCAGATACGAAGGAAAGTCATCTTTCAATATTCACATTTTTAATTTGGCTACTTCCGAGATAAACTATCTATCAGCCACGCGAAGCAGCAATGAAGGGCATTTCTTTGCGAATCGTCTTAAGATTTTTGAAGAAATGGAAGATGAAGATTCCTTTGAAATCTTGGATTCCTCACCTTCCCACCTTACTCCTGGCACATTGCAAAATAGAGCTTTTGCTGGATCGGTAGATAAATTGACACCTGGCAAGAACTGTTCACCTCCAGCATTGCAGAATCTGTTTAATGGGTCTAAACTTAATAGCGTAAACTGGGGAGAGGGTGGGAAGGCCCATTCTTCAAGGAGTGCCAATTCACTAGACAATCAGTTCACCAGAGATATAGGTGTCCAGTTTAATGCAGTTGAGTTTAAAAGGTCTACTGAAGAATTGAAATTGCGTGCTTCTATTGAGGAAAAGGTTAAAAAAACTGTGATAAAGAAGCGGAAAACAGATGGCCAGGAACCTTCTGCTGAACATGAAGAGGAGGTAGAAATGCGCAATAGATTTTATGAAAGTGCATCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGGGCCATCAATGCAGCAAAAGCATTTGAACCACCTAATCCTTTTTGTAGGGTTGTCCTGCGGCCCTCATATTTATATAGGGGATGCATAATGTATTTGCCATCCTGTTTTGCAGAACAGCATTTGAATGGAGTTTCAGGATTTATAAAACTTCAAATCTGTGATGGGAGACAGTGGCCCGTTCGCTGCCTTTTTAGAGGAGGTAGAGCTAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGGGAAGGTGATGTCTGTCTGTTTGAGCTGCTTAGAATGAAGGATGTAGTGCTGCAAGTTACTGTATTTCGTGTCACTGAGGATGTGGAATTGTTGAGCCCTCCTTTGCAGCAGAACCAAAATGTGAACTCAGCTAAACTGTTAAACACTCCCATGCAGCATCACATCCCTTCAACTAAACTGATTAGAAATTAA 1290 0.4132 MQRPSFHRLVLPFTLQARKLSLPDSFMRKYGGELSTIATLSVPDGSVWRIGLKKADNKFWFHDGWQEFVQRYSIGVGYLLVFRYEGKSSFNIHIFNLATSEINYLSATRSSNEGHFFANRLKIFEEMEDEDSFEILDSSPSHLTPGTLQNRAFAGSVDKLTPGKNCSPPALQNLFNGSKLNSVNWGEGGKAHSSRSANSLDNQFTRDIGVQFNAVEFKRSTEELKLRASIEEKVKKTVIKKRKTDGQEPSAEHEEEVEMRNRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEQHLNGVSGFIKLQICDGRQWPVRCLFRGGRAKLSQGWFEFSLENNLGEGDVCLFELLRMKDVVLQVTVFRVTEDVELLSPPLQQNQNVNSAKLLNTPMQHHIPSTKLIRN* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00625 429 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Rops3g00625 429 Pfam B3 DNA binding domain 17 95 IPR003340 GO:0003677
Rops3g00625 429 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
Rops3g00625 429 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Rops3g00625 429 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Rops3g00625 429 CDD B3_DNA 19 96 IPR003340 GO:0003677
Rops3g00625 429 SMART B3_2 296 391 IPR003340 GO:0003677
Rops3g00625 429 SMART B3_2 6 98 IPR003340 GO:0003677
Rops3g00625 429 Gene3D - 1 98 IPR015300 -
Rops3g00625 429 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Rops3g00625 429 PANTHER B3 DOMAIN-CONTAINING 2 383 - -
Rops3g00625 429 CDD B3_DNA 294 389 IPR003340 GO:0003677
Rops3g00625 429 Gene3D - 273 394 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00625 Rops-Chr3 7754632 7758396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00625 1 395 B3 DNA Binding Superfamily AT3G18990 51.250 1.18e-130 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops3g00625 B3 6.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00625 - - gmx:100813285 722.235