Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00624 ATGACTAACTCAGCCGAGAAGTATCCTGATTTCTTCAAAGTCTTCCTTCCAGAGAAACACTCTGAAAGAATGCTTATCCCAAATGCTTTTGTGAAGTTGACACGCTTTCAAGAAAGGGTACATGAGGATGTCATCCTTCAAGATCGTAGTGGGAGAGTTTGGCATGTCAAAGCACGTCCTATTGGCAATCAACTTTATTTTGATGATGGTTGGAAGCGGTTCCGAGAAGAAAATTATTTAGAGACTGCTGATTTTGTCATCTTCACACATGTAGGAAATAATGTTTTCAAGTTCAAAATCGTTGAACTATCTTCATGTTGTGAAAAGAAAGAACACAGAAAAGAAAATGATGATATGATGGAGGTTGAGGGAGAGGGAGAGGGAGAGGAAGATCAAGAACAAAGTGAAGACAGCGGTGATGATGATGATGATGAGGATGAGGATATAGATATAGAAGAAGAGAATGAAGAATACAATGGGAACGAGAATATTCAATCTCATTGTGGTGCCTGCAAAGCTCCTGTTAACTGCAAAAGGGACATTGGGAGCAGTTCTGCCACCAAGGCTGAACTTGAAAACCGTGAGATTGAAGCGGAGAATTACATAAACCCAGACAATCCACACTTTGCAGCAAAACTGACTAAAAGCAGACCCAATGAATTGCATATTCCAAAACGTATCGTTAAAGACTTTGCTCTTAGCTTTCCAAAAAAGATTACCCTTGTATGCTGCCAATGCCAGGATATTCAAAGAAATGAAATGGTAGACTATCATCTCAGCTTGCCACAACAGATACCCATCAAATATGGAGGGAGAGGAGAAGTATATACTTGGAAAGATGGTCGAGAAGACAAAATAATAGAAATGTTACGGGTGCATGTACGTAGTGCAAGGGAGGAATGA 903 0.3998 MTNSAEKYPDFFKVFLPEKHSERMLIPNAFVKLTRFQERVHEDVILQDRSGRVWHVKARPIGNQLYFDDGWKRFREENYLETADFVIFTHVGNNVFKFKIVELSSCCEKKEHRKENDDMMEVEGEGEGEEDQEQSEDSGDDDDDEDEDIDIEEENEEYNGNENIQSHCGACKAPVNCKRDIGSSSATKAELENREIEAENYINPDNPHFAAKLTKSRPNELHIPKRIVKDFALSFPKKITLVCCQCQDIQRNEMVDYHLSLPQQIPIKYGGRGEVYTWKDGREDKIIEMLRVHVRSAREE* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00624 300 Gene3D - 2 106 IPR015300 -
Rops3g00624 300 PANTHER B3 DOMAIN-CONTAINING 4 198 - -
Rops3g00624 300 SMART B3_2 11 104 IPR003340 GO:0003677
Rops3g00624 300 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Rops3g00624 300 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Rops3g00624 300 SUPERFAMILY DNA-binding pseudobarrel domain 6 106 IPR015300 -
Rops3g00624 300 CDD B3_DNA 9 100 IPR003340 GO:0003677
Rops3g00624 300 MobiDBLite consensus disorder prediction 121 147 - -
Rops3g00624 300 MobiDBLite consensus disorder prediction 112 147 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00624 1 242 REM Transcription Factor Family AT3G53310 26.860 1.32e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops3g00624 B3 4.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00624 - - mtr:120578114 254.988