Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00607 ATGATGGCTCCTTCTCAGCCACCCCATCATCCCCATCCCCATCACCACCGGGCCCCATCTCCATCCCCAACCTCCATCCTCAACCAGTCCACCCTACCTTCACCGTCAAAGTCGCCGGCGGTGGATTTCAGCCCTCCGTTGATTGCAATGGTGGTGGTGGTTGCCACAGCCTTCGTGGTCGTCACCTATTCCCGTCTCATCGGCCGCCACCTGAGACCTCCCATCCAACGCCTACTCCGCCGTTTCGGCCGTCGCAGGTTACCACCGTCATCAGTCGGCGACATAGAGTCCCTCCAATACGATTCCACATTGGATAACCCACAAGTCTTCTCTCCCTACGGCTTAGACGAGTATGTTATCAAAAGCATACCCTTTTCGCTTTACACTACGAAATACGAAGAATCACGACGTGACTGTGCCGTTTGTTTACTTGAATTCGAGGATGAAGAGTACGTTCGGACGTTACCCGTTTGTTCTCACACGTTTCACGTGGATTGCATCGATGCTTGGCTTCGTTCACACGCTAACTGTCCTCTTTGCCGTGCCGGAGTTCTCTCTCACACCTTCACGCCACTCATGGCTGCAAGAATCCGACCCACGTTTGAAGATATCCACTTGGACCCGCTACTACAACAACCTCTCCCTCACTCCCCTCTTCTCCCTGAGATTACACCCTGCGTCGATGAAAACTCTCCCAGAAGGAACAACCCTACTTCTGAAGATCGTTTTAACGCAAGAGACTTTTTGTTGAAGCGTTCTTATTCATTTGGTTTTGAAAGGAGCTTGCCGTCGGAGAGGATTGTTATAGACCCGGTAACTGCCTCGCCGTGGCGGTACCGCAGAGGGAGTAGTAGTTTCTGGAGTAAGAGGCCGTCGCCGTTTGGATCGTTAGGGAAGCCGAGGGTGTTTTCGTTTAGGTATTACAGAGGGATGAAGTCTCCGTTTTTCCGACGGAGGGGGTTGTTTCCGTTGTCGGAGTCCAGCATGAGGTACGCCGGCGGTGGGAGTTCGTCTCGGCGGAGCAAGTCGATAGCGAGTCCCATGTTCCTGAGGTCGTCGGTTTCGGCGGCGGCTTTTTCATCGAGCCGGCTGAGGTGCGGTGATCCCGAGGCACTGCTGTCTCCGGAGAGGTTTAACCGGAGATAA 1146 0.5393 MMAPSQPPHHPHPHHHRAPSPSPTSILNQSTLPSPSKSPAVDFSPPLIAMVVVVATAFVVVTYSRLIGRHLRPPIQRLLRRFGRRRLPPSSVGDIESLQYDSTLDNPQVFSPYGLDEYVIKSIPFSLYTTKYEESRRDCAVCLLEFEDEEYVRTLPVCSHTFHVDCIDAWLRSHANCPLCRAGVLSHTFTPLMAARIRPTFEDIHLDPLLQQPLPHSPLLPEITPCVDENSPRRNNPTSEDRFNARDFLLKRSYSFGFERSLPSERIVIDPVTASPWRYRRGSSSFWSKRPSPFGSLGKPRVFSFRYYRGMKSPFFRRRGLFPLSESSMRYAGGGSSSRRSKSIASPMFLRSSVSAAAFSSSRLRCGDPEALLSPERFNRR* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00607 381 CDD RING-H2_EL5-like 138 181 - -
Rops3g00607 381 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Rops3g00607 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 185 IPR013083 -
Rops3g00607 381 PANTHER RING-H2 FINGER PROTEIN ATL16 26 195 IPR044600 GO:0016567|GO:0016740
Rops3g00607 381 MobiDBLite consensus disorder prediction 1 38 - -
Rops3g00607 381 FunFam RING-H2 finger protein ATL65 108 185 - -
Rops3g00607 381 Pfam Ring finger domain 138 181 IPR001841 -
Rops3g00607 381 SMART ring_2 139 180 IPR001841 -
Rops3g00607 381 MobiDBLite consensus disorder prediction 21 38 - -
Rops3g00607 381 SUPERFAMILY RING/U-box 119 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00607 Rops-Chr3 7605535 7607759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00607 34 381 C3H Transcription Factor Family AT3G18930 46.212 3.73e-88 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00607 - K19041 gmx:100806115 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00607 3 7605535 7607759 Rops3g00607 3 7605535 7607759 ECH