Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00596 ATGGATGATTACGCTAGTAGCGACGAGGAATATTGTTACTCCGATCAGGAGGATTCCGTTGACGATGCCTTCGAAAACGACGAACAAGATTATCAGTTGCTCGCTTCTAAAGGTCCCACTACTCAGGTGATTACGAAGGAATCACTGCTAGCTGCACAGAGGGAGGATTTACGCAGAGTGATGGACATGCTATCTGTGAGAGAGCAGCATGCTCGTACACTGCTTATTTATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAGGGGGAAAGCATTTCTGTTTGCTGAAGCAGGTTTAAGTGTGGTTGAACATCGTGACTCTGACTCATTAGCTTGTGCTTCAGTAATGTGCGAAATCTGCATAGAGGATGTTCCTGGTAATGAAGCAACAAGAATGGACTGTGGTCACTGCTTTTGCAACTCATGTTGGACAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAACGCATTAGATGCATGGCACACAAATGTTTTTCCATTTGTGATGAAGCTGTTGTAAGAACTCTACTCAGTAGAAAGCACCCTGATATGGCTGAGAAATATGAACGCTTTCTTCTTGAATCCTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCCAGCACACCTCATTGTGGGAATGCAATCCGTATTGAGGATGATGACTCATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAATTGCTTGTCAGAAGCACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGGCTAAGAAGTGTCAAGATGAATCTGAAACTGTTAATTGGATAACTGTTCATACAAAACCTTGTCCAAAGTGCCACAAACCAGTGGAGAAGAATGGTGGTTGTAATTTGGTCAGCTGTATCTGTGGCCAAGCATTTTGTTGGTTATGTGGTGGAGCCACTGGCCGAGATCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGACCAAGAAAAAACAGCTGAACGGGCAAAGAGGGATCTGTATAGGTATATGCACTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGCTAGAAAGTAAACTGAAAGAGACCATACAAGGGAAGATTGCTATTTCCGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTTTCATATTCATATGCATTTGCATTTTACATGTTTGGAGATGAGCTTTTTAAAGAAGAAATGTCAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAACAGCAGCTTGAGGGAAATGTTGAAAAACTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTCAAGATGATAAGGTCATGGATATAAGGATGCAGATAATCAATCTGTCAACAATTATTGACAAACTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCGTCTTAGTACTCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAGGGCTTCAGAACTTTCAGTTTGTTGGAGCAATAAAGCCAATAATACTGGTGTAACAGCAGAACTTGATCGGCCTTCTGGATCTGGAAGTTCAGTTGAGAGTGGAGGATGTTCTTCTCGTAAGCGTGCTAAAAAAGATGGTCTTGGAGGTGCCATTTTTGATCTAAACTTGCCAGCAGAGTTGGTAGACAGAAATTGA 1746 0.4078 MDDYASSDEEYCYSDQEDSVDDAFENDEQDYQLLASKGPTTQVITKESLLAAQREDLRRVMDMLSVREQHARTLLIYHRWDVEKLFAVYVDRGKAFLFAEAGLSVVEHRDSDSLACASVMCEICIEDVPGNEATRMDCGHCFCNSCWTEHFIVKINEGQSKRIRCMAHKCFSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRIEDDDSCEVECSCGLQFCFNCLSEAHSPCSCLMWELWAKKCQDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSIAGHSCGRYKDQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMSEAQREIKQNLFEDQQQQLEGNVEKLSKILEEPFETFQDDKVMDIRMQIINLSTIIDKLCQKMYECIENDLLGSLRLSTHSIAPYKSKGIERASELSVCWSNKANNTGVTAELDRPSGSGSSVESGGCSSRKRAKKDGLGGAIFDLNLPAELVDRN* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00596 581 SUPERFAMILY RING/U-box 262 319 - -
Rops3g00596 581 FunFam RBR-type E3 ubiquitin transferase 250 497 - -
Rops3g00596 581 Pfam Ariadne domain 331 581 IPR045840 -
Rops3g00596 581 SUPERFAMILY RING/U-box 119 204 - -
Rops3g00596 581 MobiDBLite consensus disorder prediction 535 553 - -
Rops3g00596 581 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Rops3g00596 581 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Rops3g00596 581 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 GO:0008270
Rops3g00596 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 206 IPR013083 -
Rops3g00596 581 CDD Rcat_RBR_ARI1-like 275 328 - -
Rops3g00596 581 Gene3D - 250 497 - -
Rops3g00596 581 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 397 IPR031127 GO:0004842|GO:0016567
Rops3g00596 581 SUPERFAMILY RING/U-box 192 260 - -
Rops3g00596 581 CDD BRcat_RBR_ANKIB1 199 263 - -
Rops3g00596 581 MobiDBLite consensus disorder prediction 535 560 - -
Rops3g00596 581 SMART ibrneu5 192 254 IPR002867 GO:0008270
Rops3g00596 581 SMART ibrneu5 262 327 IPR002867 GO:0008270
Rops3g00596 581 CDD RING-HC_RBR_TRIAD1 119 170 - -
Rops3g00596 581 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00596 Rops-Chr3 7493600 7498917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00596 61 521 ARIADNE family AT2G16090 73.118 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00596 K11968 - gmx:100783343 1044.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00596 3 7493600 7498917 Rops3g00596 3 7493600 7498917 ECH