Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00593 ATGCCAATGGAGGCTTTCTCTGTACAGTCACTGACCTCAACCACCATTCCCTCCTCTTTGGCACGTAGAGGGACTACAGAGAAACCTTCTGGGCATGTCAAACTTTCCAAATATTCGCATTTCATGAGGTACCCTTGTTCCACAAGAGCCACAAAACACAAAATCCATAGCACTAGAGCTCAAGCTTCAGGTTCAACTAAATCTAGTACTACAACTGAGGGGATTCCTGAGAAAACAGATTCCAAGGATGACAACGTAGTATTTGTTGCTGGTGCTACTGGAAAAGTTGGTTCACGAACTGTGAGGGAGCTTGTAAAGCTTGGTTTTAGAGTTAGAGCTGGAGTGCGGAATGCTCAGAGAGCTGGTTCACTAGTTAAGAGTGTTGAACAAATGAAGCTTGATGGAGGGAGTCCAGCTGTAGAGAAGCTTGAAATTGTGGAATGTGATTTGGAGAAACCAGATCAAATTGTATCAGCGTTAGGGAATGCATCAACGGTGATATGTAGCATTGGTGCCAGTGAGAAGGAAGTTTTTGACATCACTGGACCCTTTCGAATTGATTATCAGGCCACAAAAAACCTAATTGATGCTGCAACTGTTGCCAAAGTAAATCACTTCATATTGGTTACTTCATTGGGAACAAACAAAATTGGCTTTCCTGCAGCTATTCTCAATTTGTTTTGGGGAGTCCTGATTTGGAAAAGGAAGGCAGAAGAAGCATTGCTAGTCAGTGGACTTCCATATACAATAGTGAGACCTGGAGGTATGGAGCGACCTACTGATGCCTTCAAGGAAACTCATAACATAACCCTATCAACTGAAGATACTTTATTTGGGGGTCAGGTGTCAAACCTTCAGGTAGCTGAACTCATGGCAGTCATGGCCAAGAATCGTGATCTCTCATATTGTAAAATAGTGGAGGTAATTGCAGAAACAACTGCACCTTTGACTCCCATGGAGGAACTTCTTGCAAAGATACCTTCTCAACGCCCTTACATTTCTCCACCCAAGGAACCAGATACTGCAGCTGTCAATGTTCCAGATCCCTCTGCTGATGTTGTGGCAGCGGAGCCTAGCATTGCCACTCAGAAGGAAACCTCACAACCTAAACCAGTGGCAAAACAGCCACTTTCTCCTTATACTGTTTATGAAGATTTAAAGCCACCTTCATCTCCTTCTCCATCTCAGCCTAGTGACGGGAAACAAATAGAGATCAGTGATGCAGTGCCAACGCCTAGTGTTTCAGATATTCCAAGTAGCATAGATGGCATCTCTGAGACAACATCTTCCTCAAAAGGGCAGAAGTCTCTTTCTCCTTATGCAGTATATCCTGACTTAAAGCCTCCCACTTCACCATCTCCTAATGCACCAACTATATCATCTTCCATATCTGCTAGGGATGGGGTGCCCAAGATAGATACAGCATCAAGCAATGGACCAGCCCAACTTTCAATAGCAGATAAACCAAAGGATGAACAACATCTACCTGAACCAAAGTCAAGACCACTTTCACCTTATACAATGTATGAGGACTTGAAGCCTCCAGCATCACCAACACCTTCCTTCAACAAATCTTAG 1578 0.4373 MPMEAFSVQSLTSTTIPSSLARRGTTEKPSGHVKLSKYSHFMRYPCSTRATKHKIHSTRAQASGSTKSSTTTEGIPEKTDSKDDNVVFVAGATGKVGSRTVRELVKLGFRVRAGVRNAQRAGSLVKSVEQMKLDGGSPAVEKLEIVECDLEKPDQIVSALGNASTVICSIGASEKEVFDITGPFRIDYQATKNLIDAATVAKVNHFILVTSLGTNKIGFPAAILNLFWGVLIWKRKAEEALLVSGLPYTIVRPGGMERPTDAFKETHNITLSTEDTLFGGQVSNLQVAELMAVMAKNRDLSYCKIVEVIAETTAPLTPMEELLAKIPSQRPYISPPKEPDTAAVNVPDPSADVVAAEPSIATQKETSQPKPVAKQPLSPYTVYEDLKPPSSPSPSQPSDGKQIEISDAVPTPSVSDIPSSIDGISETTSSSKGQKSLSPYAVYPDLKPPTSPSPNAPTISSSISARDGVPKIDTASSNGPAQLSIADKPKDEQHLPEPKSRPLSPYTMYEDLKPPASPTPSFNKS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00593 525 Gene3D - 83 329 - -
Rops3g00593 525 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 3 462 IPR044719 -
Rops3g00593 525 MobiDBLite consensus disorder prediction 49 81 - -
Rops3g00593 525 MobiDBLite consensus disorder prediction 381 525 - -
Rops3g00593 525 MobiDBLite consensus disorder prediction 57 75 - -
Rops3g00593 525 MobiDBLite consensus disorder prediction 1 34 - -
Rops3g00593 525 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 306 IPR036291 -
Rops3g00593 525 CDD SDR_a5 87 312 - -
Rops3g00593 525 MobiDBLite consensus disorder prediction 1 25 - -
Rops3g00593 525 MobiDBLite consensus disorder prediction 396 437 - -
Rops3g00593 525 FunFam Protein TIC 62, chloroplastic 83 329 - -
Rops3g00593 525 Pfam NAD(P)H-binding 91 297 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00593 Rops-Chr3 7474300 7478852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00593 79 204 Monolignol Biosynthesis Gene Families AT5G58490 29.688 4.59e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00593 - - gmx:100779056 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00593 3 7474300 7478852 Rops3g00593 3 7474300 7478852 ECH