Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00571 ATGGCAGAGTCTGGAAACACCTCAACCCCACTTATGAGTTTGAAGGTTCTCGTTTTAGCAGGTATTTTTCTCGTCATATTGGTCATAATGGGCCTTTTGATTTTCCTCTGTTTTCGTGGGAGCAGAAGCTGTAGGAAGCGGAAGTTAACGGTGAAGCACAGCTCCGGTACTATTCCTTTGGTTTCCAAGGAGATCGCGGTGGTTAAGTCCTCGGATCTTAACCTTTCTTCTGAGAAAACGGAGATTGAGGTTGAAGAATATGCTGACGTGGATCCTAAGAAGGAGGCGGAGATCAAGGTTGAGATTGGAACGATGAGGAAGAGTGACGTGTCAAGTAGGGTGGAGGATCCTAACATAGGGTGGGGTCGCTGGTATACCCTCAAGGAAGTTGAGTTAGCAACGCGTGGATTTGCTCAAGAGAAAGTGATTGGGGAAGGTGGGTATGGAGTTGTGTACAGGGGAGTTCTGCAAGATGGTTCTGTTGTTGCTGTCAAGAATCTTCTTAACAACAAGGGTCAAGCTGAGAAGGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTAAGGCACAAGAATTTGGTTGGTTTAGTAGGATATTGTGCAGAAGGTTCCCGAAGGATGCTTGTTTATGAATATGTCAACAATGGAAATTTGGAGCAGTGGCTGCATGGTGATGTGGGACCAGTTAGCCCCTTGACATGGGATATTCGAATGAGAATTGCCATTGCGACTGCAAAAGGGCTAGCCTATTTGCACGAAGGCTTAGAACCCAAAGTTGTGCACCGAGATATAAAATCCAGTAACATTCTTTTGGATAAAAACTGGAATGCCAAAGTATCAGATTTTGGACTTGCCAAGCTCTTAGGATCTGAGAAAAGCCATGTGACTACGCGTGTAATGGGAACATTTGGATATGTTTCACCTGAGTATGCAAGCACAGGTATGCTTAATGAGCGCAGTGATGTATATAGCTTTGGGGTTCTACTCATGGAGATAATTACAGGAAGATGCCCCATTGATTATTCAAGACCACCCGGAGAGATGAATTTGGTTGATTGGTTTAAGGCAATGGTGGGAAGTCGTCGCAGTGATGAGCTTGTTGATCCTTTGATTAAGATTCCACCCTCTCCAAGATCTCTGAAGCGAGTTTTACTGATTTGTCTGCGTTGTATAGACTTGGATGTCATTAAGCGACCAAAGATGGGTCAAATTATTCATATGCTTGAGTCAGATGATTTCCCCTTTCGTTCTGAGCTACGTACAATTAGGGACAAAGATCCTGTGTCTTCTCATGCAGATGTTTCCATTAAAGTTCCATATCCACCAAGGCATGCAGAACCAGTAGAAAAATCAGCACGGAGATGA 1365 0.441 MAESGNTSTPLMSLKVLVLAGIFLVILVIMGLLIFLCFRGSRSCRKRKLTVKHSSGTIPLVSKEIAVVKSSDLNLSSEKTEIEVEEYADVDPKKEAEIKVEIGTMRKSDVSSRVEDPNIGWGRWYTLKEVELATRGFAQEKVIGEGGYGVVYRGVLQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCAEGSRRMLVYEYVNNGNLEQWLHGDVGPVSPLTWDIRMRIAIATAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKSHVTTRVMGTFGYVSPEYASTGMLNERSDVYSFGVLLMEIITGRCPIDYSRPPGEMNLVDWFKAMVGSRRSDELVDPLIKIPPSPRSLKRVLLICLRCIDLDVIKRPKMGQIIHMLESDDFPFRSELRTIRDKDPVSSHADVSIKVPYPPRHAEPVEKSARR* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00571 454 Pfam Protein kinase domain 138 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00571 454 FunFam Probable serine/threonine-protein kinase At1g01540 117 212 - -
Rops3g00571 454 CDD STKc_IRAK 143 409 - -
Rops3g00571 454 ProSitePatterns Protein kinases ATP-binding region signature. 143 165 IPR017441 GO:0005524
Rops3g00571 454 Gene3D Phosphorylase Kinase; domain 1 95 212 - -
Rops3g00571 454 Gene3D Transferase(Phosphotransferase) domain 1 213 420 - -
Rops3g00571 454 MobiDBLite consensus disorder prediction 426 454 - -
Rops3g00571 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Rops3g00571 454 PANTHER OS01G0323000 PROTEIN 5 427 - -
Rops3g00571 454 SUPERFAMILY Protein kinase-like (PK-like) 114 409 IPR011009 -
Rops3g00571 454 FunFam Putative receptor-like serine/threonine-protein kinase 213 423 - -
Rops3g00571 454 SMART serkin_6 137 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00571 454 ProSiteProfiles Protein kinase domain profile. 137 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00571 Rops-Chr3 7124030 7127238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00571 117 428 Receptor kinase-like Gene Family AT4G02010 45.886 3.08e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Rops3g00571 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00571 - - gmx:100305442 714.531