Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00566 ATGCTTCTTTCATGTCAAAAATACAACCTTTACCTTCCATGTTCCTCTGTTCACTTCTCTAACCCAACAACATCATCCACCACCATTGTCAATTGCTGCCAAAACCCAAATGAACATCACCACCCCATTCCCATTCTCCGCAAACACAACTCCAAATCCACGAACTTTCTCCTTCACCACCTTTCCCACAAGGACAGTGATGAATACCCTTCACCCACTGAGCTACAAGATCCAATGCCCCACCAAGAAAAGGTGAAACTTTTAGAACTTTCCCTCGTAAAGAAAAGGACCCCTCAGTTCCCTGGCTCCATTTATGCTCAATCCCCAAGTGACCCTGATGTGGGTTCTTCTCTTCCTCCTCTGCGTACTCTGTTTCGATCAAGTGATTACAAAGATGAGGAGGAAGAAGAAGAGATGATCATGCGTGCTCTTGAGATTCGTAGGAAGGTTACTGAAGAGGTTTTCAAAGAAGCCATGCAAAAGGGAAAGTTTGGAATCACTTACACCACCAATTTGGTTAGTAGGTTAACTGGTTTTATTGATTATGTAATGATTGAAGCTGCTAACTTGAAGAGAATGCCGGAATATTCTCACTCCACCTTCAATTTACGTGCCAAAACCGTTATTAATGACTCTCAAGTCGTGCCACTTATCAGATGGTTGAAGCATAATGCACTATCGTATCCTCAGATAGCAAAGCTCATTTTGATGTCAAGAGGAAAACTTGAGTCCATAAGGCATCGTGTTGAGTGGTTGAAGTCGGTTCATGTGAAAGGAGAGTTTATTGGGTCTGCACTGTTGAAGGGTGGAGATAATATTTTGCAACGCAGGGATGAGGAACTGGATGAGATTGTTGAGTATTTAGAGTCCAATGGAGTCAGGAGGGACTGGATGGGTTATGTCATAAGTAGATGTCCTCAATTGTTGTCTTACAGCTTGGAAGAAGTGAAGACTCGTGTGCATTTCTACCTAGATATGGGTTTAGATAAGAAGGATTTTGGCACAATGGTTTTTGATTTTCCTAGAGCACTTGGTTACTATACTCTGGAAGAAATGAACCAAAAGGTTAATTACTTAAAAGAATTTGGGCTTCAAAGTAAGGATGTTGGCAAATTGTTAGCATTTAGGCCACAATTGATGGCGTGCAGCATTGAGGAACAATGGAAACCTCTAGTTAAGTATCTCTACTATTATGGGATCACCCGGGATGGTATGAGGAGAATGCTTACCATTAAACCAATGGTCTTTTGTGTTGACTTGGAGATGACTATTGTGCCAAAGGTAAAGTTTTTTCAGGACATAGGGGTTCGAAATGATGCGATTGGCAACATGCTTGTAAAGTTTCCTACTCTACTCACTTACAGCCTGGACAAGAAGATCAAGCCAGTGGTCATATTCTTGATGACCAAGGCTGGTGTCAGTGAGAGAGATATTGGTAAGGTTATAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATTGTACATAAGCTTGAAGTAAATGTAAAATATTTTTTGTCTCTTGGCATACGTCTTCGGCAATTGGGTGAAATGATTGCTGGTTTCCCGATGCTGCTCAGATACAATATAGATGTCCTTCGGCCTAAGTATAGTTATTTGCGGAAAACCATGGTCCGGACTTTGCAAGATCTCATTGAGTTTCCAAGGTTTTTCAGCTATTCTCTTGATGGTCGAATTATCCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTTAAGCTGAGATACATGTTGGCTAGCAGTGATGAAGAATTTAACAAAATGGTCAAGGCTGTAATTAGAAAACGCCAAAGATTTCAATCTGCTGGCATGAAGGAGGATACTACTCATCCCCAATCTGTTATTACTGGGGATAGTGCTACACCGCAGACATAA 1896 0.4156 MLLSCQKYNLYLPCSSVHFSNPTTSSTTIVNCCQNPNEHHHPIPILRKHNSKSTNFLLHHLSHKDSDEYPSPTELQDPMPHQEKVKLLELSLVKKRTPQFPGSIYAQSPSDPDVGSSLPPLRTLFRSSDYKDEEEEEEMIMRALEIRRKVTEEVFKEAMQKGKFGITYTTNLVSRLTGFIDYVMIEAANLKRMPEYSHSTFNLRAKTVINDSQVVPLIRWLKHNALSYPQIAKLILMSRGKLESIRHRVEWLKSVHVKGEFIGSALLKGGDNILQRRDEELDEIVEYLESNGVRRDWMGYVISRCPQLLSYSLEEVKTRVHFYLDMGLDKKDFGTMVFDFPRALGYYTLEEMNQKVNYLKEFGLQSKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQDIGVRNDAIGNMLVKFPTLLTYSLDKKIKPVVIFLMTKAGVSERDIGKVIALGPELLGCSIVHKLEVNVKYFLSLGIRLRQLGEMIAGFPMLLRYNIDVLRPKYSYLRKTMVRTLQDLIEFPRFFSYSLDGRIIPRHKVLVENQINVKLRYMLASSDEEFNKMVKAVIRKRQRFQSAGMKEDTTHPQSVITGDSATPQT* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00566 631 MobiDBLite consensus disorder prediction 607 631 - -
Rops3g00566 631 SMART mt_12 515 545 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 SMART mt_12 334 365 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 SMART mt_12 547 578 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 SMART mt_12 442 474 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 SMART mt_12 370 401 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 SMART mt_12 479 510 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 SMART mt_12 299 329 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 SMART mt_12 406 437 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 Gene3D Transcription termination factor 3, mitochondrial 376 607 IPR038538 -
Rops3g00566 631 PANTHER CGI-12 PROTEIN-RELATED 273 372 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 Pfam mTERF 350 592 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 Pfam mTERF 227 360 IPR003690 GO:0003690|GO:0006355
Rops3g00566 631 MobiDBLite consensus disorder prediction 611 631 - -
Rops3g00566 631 FunFam BnaA09g42960D protein 372 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00566 Rops-Chr3 7087246 7091108 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops3g00566 mTERF 4.2e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00566 K15032 - mnt:21401514 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00566 3 7087246 7091108 Rops3g00566 3 7087246 7091108 ECH