Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00565 ATGGTGAATAATCGGGGAAACATGGTATCATTTGGATTCTTGTTCTTGTTGCTGTTTAACTTGGAATTCACATTGGAGCAGATTGAGCCACGGAGCTCTCCTACTGAACGTGCTGCACTTCTAGAACTTCGATCCTCTCTAGGTTTGAGGAGCAAGGAATGGCCAATAAAGGGTGACCCTTGTTCAATCTGGATTGGTATCAGGTGCCAAAATGGTAGAGTTATTGGCATCAATATCTCTGGCTTTAGAAGAACAAGGCTTGGAAGGCAAAACCCACGTTTTTCTGTGGATGCTTTGGCCAATTTCACCCTCTTGGAGTCCTTCAATGCCTCCAATTTTCTGCTCCCTGGTTCTATCCCTGATTGGTTTGGTCAGCGGCTACCTTCACTTCGAATGCTTGATCTTCGTTCTTGTTCCATCAATGATGCTATCCCTTCTAGTCTTGGGAATTTAACCAGTCTCACTAGCCTCTATCTGTCTCATAACAATCTTACTGGGATACTTCCTGTTAGTGTTGGTCAAATGTTAGCACTTTCAGTGCTTGATCTTTCCCAAAATGCTCTTACTGGGTCCCTTCCATCATCCATTGCCTCTCTTGGGAATCTTTCTTCCCTTGATGTTTCTGCCAATTATTTATTCGGGCCAATTCCCCCTGCCATTGGGGCATTCTCGAAGTTACAATACTTGAATCTTTCCAACAATGGTCTTACTTCTTCTATACCTGCAGAATTGGTGAATCTTAGTGACTTAGTTGACCTGGATCTTAGTACGAATTCTTTCTCCGGTTCCGTGCCTTCCACTTTGAAAGGGTTGAGGAGCTTGAAGAGATTGAATCTTGGAAATAATATACTTGATGGACATCTGCCAGAGGACCTGTTTACTACTTCATCTCAGTTGCAGTTTGTAGTGCTGAGACAGAACAATTTGACTGGTGCTTTGCCTGTAGAGTTGTGGTCTCTGCCAAGATTGAGCTTCCTTGATGTTTCTAGCAATAACTTCACTGGTCTGCTTCCTAATTCGAGTTCCGTTATTAATTCTAGTGTTGCGGTGCTCAATATTTCTCATAATATGCTTTATGGAGGCCTCAGTCCTCTGCTCAGAAGATTCAGTTTTATTGATCTGTCAAACAATTATTTTGAGGGCAGGGTTCTGGACTTCATGCTTAATGCATCTCTAGATAGCAATTGCCTCCAAAATGTGACAGATCAAAGGACACCAGTAGAATGTGCTTCATTTTATGCTGAGAGGGGCCTCACTTTTGATAATTTTGGACGTCCAAATTCAACAGGAGATCCTGCAGCAAAAGGCTCTGGGAAGAGCAATAAAAACAAGATAATATTGGCAGCAGTCTTGGGTGGGGTGGGTTTAATTGCAATATTGTTGTTAATTGTACTGCTGCTTGTATGCATTCGTAAGAAGGGTAATTCAAATCAAAGGGGAAATGGTGTGGGCCCTGCTCCTGCTGGAAGCAGTCCCCCACATCCTGGTGTATCAATCAACTATTCAAGTGTTGGAGACTCGTTTACATATCATCAGTTGCTCCAGGCCACAGGTGAATTCAATGATACAAATCTTATCAAACATGGTCACACTGGGGATCTCTTTAATGGTGTTTTGGAAAGTGGGATCCCTGTAGTCATCAAAAGGATTGATATTCATTCAACTAAAAAGGATGCGTACTTATTGGAATTGGAATTTTTCAATAAGGTTTCCCATCCAAAATTTGTTCCCCTGTTGGGTCATTGCTTAGAAAATGAGAATGAGAAGTTCCTAGTTTATAAACATATGCCAAATAGGGACTTGTCAAATAGCTTGTACCGTAGAAAAAGCACATCTGAAGATGATAATCTGCAGTCATTGGACTGGATAACAAGGTTGAAAATTGCCATTGGAGCGGCAGAGGCCCTATCTTATCTACATCATGAGTGCACTCCGCCTATTGTTCACAGAGATATCCAAGCGAGCAGTATACTTCTAGATGATAAATACGAAGTTCGGTTAGGGAGTCTAAGTGAAGCCTCCCCTCAAGATGGGGATACTCATCAAAACAAAATCACCCGGTTGCTGCGGTTGCCCCAGTCGTCTGAACAAGCCACATCTGGTGCATCAACATCAGTTTGTGCCTATGACGTGTATTGTTTTGGGAAAGTGTTACTTGAGCTGGTGACTGGTAAGCTGGGAATTAGTGCATCTGATGATGCTGAAGTAAAACAATGGTTAGATCATATGCTACCTTGCATTAGTATTTATGACAGGGAGCTTGTAACAAAAATAGTAGATCCATCTCTAATTGTTGATGAGGATCTGTTGGATGAAGTGTGGGCAATGGCCATCATAGCCAGGTCTTGCCTAAATCCCAAACCTTCAAGAAGACCCCCTATGAGATATGTTCTCAAGGCTTTGGAAAACCCTTTCAGAGTTGTAAGGGAAGAAAATGTCAGTTCTGCAAGGCTTAAAGCAACCTCTTCCAGAGGCTCTTTGAATGCTGCATTGTTTGGTAGTTGGCGTCATAGTTCATCTGATGTAACAGCAGTTCCAGCTACATCTGGTACAAGACTAGAAGGAGGGAGTAGTTTAAAGCGTTCAGGAACTACTGGCTCACAGGGTAGCTTCCCCAATGGCGGGGGTGGCATGTCATCCTCGCGTAGACGTCAGTCAAGAGAGATATTTCCAGAACCATCTGGAGTTCAAGATGTATTGAGGCAGGAGCAAGAGTAG 2718 0.4283 MVNNRGNMVSFGFLFLLLFNLEFTLEQIEPRSSPTERAALLELRSSLGLRSKEWPIKGDPCSIWIGIRCQNGRVIGINISGFRRTRLGRQNPRFSVDALANFTLLESFNASNFLLPGSIPDWFGQRLPSLRMLDLRSCSINDAIPSSLGNLTSLTSLYLSHNNLTGILPVSVGQMLALSVLDLSQNALTGSLPSSIASLGNLSSLDVSANYLFGPIPPAIGAFSKLQYLNLSNNGLTSSIPAELVNLSDLVDLDLSTNSFSGSVPSTLKGLRSLKRLNLGNNILDGHLPEDLFTTSSQLQFVVLRQNNLTGALPVELWSLPRLSFLDVSSNNFTGLLPNSSSVINSSVAVLNISHNMLYGGLSPLLRRFSFIDLSNNYFEGRVLDFMLNASLDSNCLQNVTDQRTPVECASFYAERGLTFDNFGRPNSTGDPAAKGSGKSNKNKIILAAVLGGVGLIAILLLIVLLLVCIRKKGNSNQRGNGVGPAPAGSSPPHPGVSINYSSVGDSFTYHQLLQATGEFNDTNLIKHGHTGDLFNGVLESGIPVVIKRIDIHSTKKDAYLLELEFFNKVSHPKFVPLLGHCLENENEKFLVYKHMPNRDLSNSLYRRKSTSEDDNLQSLDWITRLKIAIGAAEALSYLHHECTPPIVHRDIQASSILLDDKYEVRLGSLSEASPQDGDTHQNKITRLLRLPQSSEQATSGASTSVCAYDVYCFGKVLLELVTGKLGISASDDAEVKQWLDHMLPCISIYDRELVTKIVDPSLIVDEDLLDEVWAMAIIARSCLNPKPSRRPPMRYVLKALENPFRVVREENVSSARLKATSSRGSLNAALFGSWRHSSSDVTAVPATSGTRLEGGSSLKRSGTTGSQGSFPNGGGGMSSSRRRQSREIFPEPSGVQDVLRQEQE* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00565 905 PANTHER OS05G0588300 PROTEIN 172 267 - -
Rops3g00565 905 Gene3D Ribonuclease Inhibitor 33 191 IPR032675 -
Rops3g00565 905 ProSiteProfiles Leucine-rich repeat profile. 225 248 IPR001611 GO:0005515
Rops3g00565 905 FunFam Putative LRR receptor-like serine/threonine-protein kinase 596 821 - -
Rops3g00565 905 Gene3D Transferase(Phosphotransferase) domain 1 596 820 - -
Rops3g00565 905 ProSiteProfiles Leucine-rich repeat profile. 153 174 IPR001611 GO:0005515
Rops3g00565 905 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 33 192 - -
Rops3g00565 905 MobiDBLite consensus disorder prediction 841 905 - -
Rops3g00565 905 Gene3D Ribonuclease Inhibitor 192 293 IPR032675 -
Rops3g00565 905 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Rops3g00565 905 Pfam Leucine rich repeat 272 333 IPR001611 GO:0005515
Rops3g00565 905 SMART LRR_typ_2 175 199 IPR003591 -
Rops3g00565 905 SMART LRR_typ_2 271 295 IPR003591 -
Rops3g00565 905 SMART LRR_typ_2 320 343 IPR003591 -
Rops3g00565 905 SMART LRR_typ_2 223 247 IPR003591 -
Rops3g00565 905 SMART LRR_typ_2 151 174 IPR003591 -
Rops3g00565 905 SMART LRR_typ_2 127 150 IPR003591 -
Rops3g00565 905 Gene3D Ribonuclease Inhibitor 294 395 IPR032675 -
Rops3g00565 905 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 295 425 - -
Rops3g00565 905 Gene3D Phosphorylase Kinase; domain 1 497 595 - -
Rops3g00565 905 FunFam Predicted protein 490 595 - -
Rops3g00565 905 MobiDBLite consensus disorder prediction 841 884 - -
Rops3g00565 905 Pfam Leucine Rich Repeat 225 247 IPR001611 GO:0005515
Rops3g00565 905 ProSiteProfiles Protein kinase domain profile. 520 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00565 905 Pfam Protein tyrosine and serine/threonine kinase 526 740 IPR001245 GO:0004672|GO:0006468
Rops3g00565 905 FunFam Leucine-rich repeat receptor protein kinase EMS1 193 291 - -
Rops3g00565 905 MobiDBLite consensus disorder prediction 477 496 - -
Rops3g00565 905 SUPERFAMILY RNI-like 97 402 - -
Rops3g00565 905 SUPERFAMILY Protein kinase-like (PK-like) 494 801 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00565 Rops-Chr3 7080024 7086798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00565 29 693 Miscellaneous Gene Families AT2G16250 57.504 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Rops3g00565 PK_Tyr_Ser-Thr 2.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00565 - - gmx:100776587 1226.85