Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops3g00564 | ATGGCTTCAGCAGATGTTGAGTTCCGATGCTTCGTTGGTGGGCTTGCTTGGGCCACTGACAGTGATGCTCTCGAGAAAGCTTTCTCTACCTATGGCGAGATCGTTGAATCGAAGGTGATCAACGATCGTGAGACTGGAAGGTCGAGAGGGTTCGGATTCGTGACCTTTGCTAATGAGCAAGCGATGAGAGATGCGATCGATGGGATGAACGGACAGAACATTGACGGCCGCAACGTCACCGTCAACGAGGCTCAGTCCCGTGGTAGTCGCAGTAGTGGCGGTGGATACGGTGGCGGTAGTGGTGGCGGCGGCGGTGGATATGGTGGAGGTCGTCGCGAAGGTGGATATAGCAGAAACGGTGGTGGAAGCTACGGTGGTGGAGGCTACGGGAGTGGTGGTGGTGGTTACGGCGGCGGTGGCGGCAGAGACCGTAGTTACGGTGATGGTGGATCCCGCTACTCCTCTCGTGGTGGCGGTGGTGGAAGCTGGAGGGATTAG | 498 | 0.5763 | MASADVEFRCFVGGLAWATDSDALEKAFSTYGEIVESKVINDRETGRSRGFGFVTFANEQAMRDAIDGMNGQNIDGRNVTVNEAQSRGSRSSGGGYGGGSGGGGGGYGGGRREGGYSRNGGGSYGGGGYGSGGGGYGGGGGRDRSYGDGGSRYSSRGGGGGSWRD* | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops3g00564 | 165 | Gene3D | - | 2 | 107 | IPR012677 | - | |
Rops3g00564 | 165 | PANTHER | GEO13361P1-RELATED | 3 | 156 | - | - | |
Rops3g00564 | 165 | MobiDBLite | consensus disorder prediction | 68 | 165 | - | - | |
Rops3g00564 | 165 | MobiDBLite | consensus disorder prediction | 73 | 93 | - | - | |
Rops3g00564 | 165 | SUPERFAMILY | RNA-binding domain, RBD | 8 | 115 | IPR035979 | GO:0003676 | |
Rops3g00564 | 165 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 8 | 86 | IPR000504 | GO:0003723 | |
Rops3g00564 | 165 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 11 | 79 | IPR000504 | GO:0003723 | |
Rops3g00564 | 165 | CDD | RRM2_NsCP33_like | 9 | 84 | - | - | |
Rops3g00564 | 165 | SMART | rrm1_1 | 9 | 82 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops3g00564 | Rops-Chr3 | 7060125 | 7061245 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops3g00564 | 10 | 94 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.471 | 2.87e-11 | 58.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops3g00564 | - | K13195 | ccaj:109800369 | 160.999 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops3g00564 | 3 | 7060125 | 7061245 | Rops3g00564 | 3 | 7060125 | 7061245 | ECH |