Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00564 ATGGCTTCAGCAGATGTTGAGTTCCGATGCTTCGTTGGTGGGCTTGCTTGGGCCACTGACAGTGATGCTCTCGAGAAAGCTTTCTCTACCTATGGCGAGATCGTTGAATCGAAGGTGATCAACGATCGTGAGACTGGAAGGTCGAGAGGGTTCGGATTCGTGACCTTTGCTAATGAGCAAGCGATGAGAGATGCGATCGATGGGATGAACGGACAGAACATTGACGGCCGCAACGTCACCGTCAACGAGGCTCAGTCCCGTGGTAGTCGCAGTAGTGGCGGTGGATACGGTGGCGGTAGTGGTGGCGGCGGCGGTGGATATGGTGGAGGTCGTCGCGAAGGTGGATATAGCAGAAACGGTGGTGGAAGCTACGGTGGTGGAGGCTACGGGAGTGGTGGTGGTGGTTACGGCGGCGGTGGCGGCAGAGACCGTAGTTACGGTGATGGTGGATCCCGCTACTCCTCTCGTGGTGGCGGTGGTGGAAGCTGGAGGGATTAG 498 0.5763 MASADVEFRCFVGGLAWATDSDALEKAFSTYGEIVESKVINDRETGRSRGFGFVTFANEQAMRDAIDGMNGQNIDGRNVTVNEAQSRGSRSSGGGYGGGSGGGGGGYGGGRREGGYSRNGGGSYGGGGYGSGGGGYGGGGGRDRSYGDGGSRYSSRGGGGGSWRD* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00564 165 Gene3D - 2 107 IPR012677 -
Rops3g00564 165 PANTHER GEO13361P1-RELATED 3 156 - -
Rops3g00564 165 MobiDBLite consensus disorder prediction 68 165 - -
Rops3g00564 165 MobiDBLite consensus disorder prediction 73 93 - -
Rops3g00564 165 SUPERFAMILY RNA-binding domain, RBD 8 115 IPR035979 GO:0003676
Rops3g00564 165 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Rops3g00564 165 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Rops3g00564 165 CDD RRM2_NsCP33_like 9 84 - -
Rops3g00564 165 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00564 Rops-Chr3 7060125 7061245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00564 10 94 Eukaryotic Initiation Factors Gene Family AT4G34110 36.471 2.87e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00564 - K13195 ccaj:109800369 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00564 3 7060125 7061245 Rops3g00564 3 7060125 7061245 ECH