Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00562 ATGGCCTCAAGCTCTCTTAGCAAACAAAAGCATTCTGACTCCTCTTGGACACCAAAACAGAACAAGCTGTTTGAAAAGGCACTTGCAAAATATGATAAGGACACCCCGGATCGCTGGCAGAATGTAGCCAAAGCAGTTGGTGGAAAATCTGCAGATGAAGTTAAGAGACACTATGAAATCCTCTTGGAAGATCTGAGACACATAGAATCTGGCCGTATTCCCATTCCTAACTACAAGTCCACAGGAAGCAGCACCAATGTTGATGAAGAAGAGAGGCTTCTGAAGTATCTTAAGCTGAATTGA 303 0.4323 MASSSLSKQKHSDSSWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSADEVKRHYEILLEDLRHIESGRIPIPNYKSTGSSTNVDEEERLLKYLKLN* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00562 100 Gene3D - 6 75 - -
Rops3g00562 100 CDD SANT 15 62 IPR001005 -
Rops3g00562 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
Rops3g00562 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Rops3g00562 100 SMART sant 12 64 IPR001005 -
Rops3g00562 100 FunFam Transcription factor SRM1 8 75 - -
Rops3g00562 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Rops3g00562 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 87 IPR044636 GO:0003700
Rops3g00562 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00562 Rops-Chr3 7026536 7028353 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops3g00562 Myb_DNA-binding 2.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00562 - - gmx:100798314 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00562 3 7026536 7028353 Rops3g00562 3 7026536 7028353 ECH
Rops3g00562 3 7026536 7028353 Rops2g03358 2 61709767 61709988 ECH
Rops3g00562 3 7026536 7028353 Rops1g01641 1 34746571 34753535 ECH