Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00561 ATGTTACACTGTTTGAACACTTCGGGGAATCTAGGTGGAGGAAGCTGTTCTGACGTGACAGTGTTGGAAAGGCAAAGGTTTTCAACGAGGAAGTGGCAACAACAACAACAAGAAGAAAAAGAACAGGATTTTTCAGGAACTGGCTTTTCGCCTCCTCAGGGGTTGGTGATGGTTGGTGGTGACTCCACTCTTGGTGAGGTGGTAGCACCTCACTCCCAGAAGCCTGACCCGGGTTTGGAAAATGGGTGGCCCGAATTAGCCAAGTTTGATACCGGATTCGGGTCTTCTTCTGGTTTAGTACCCGCTTCTGCCATTTCAAGGACTTGTTCAGCAACCGAGAAGATGATCAGCTCCACATGTGCGAAAGAAAACTTTAGGAAGAGGAAAGCAGCTGACAAGTCTCAGAATTCCATGGTTGTTGCGGAGAGTGATAACAAAGACAAGAGGATCAAAGTGAGTGGTGATGAAGGGGAATCCAAAATCACGGAGCAAACCAGCAACAAGAGTATCAAGTCCAACACAAACAAAAACAGCAAGGAAACTTCTGTGGATACTTCAAAAGGGTCTGAGGTTCAAAATCAAAAGCCTGAATACATTCATGTACGAGCACGTCGTGGTCAAGCCACTGACAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTAGTACCGGGTTGCAACAAAATTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTATCAATGAAATTAGCAGCTGTAAACCCAAGGCTTGACTTCAACATTGATGAATTGTTTACCAAAGAGGTGTTTCCTGCTTGTGCTCAAAGTTTTCCAACCATAGGGATGCCATCAGACATGACTAACCCTGCATATCTTCAGCTCAATTCAGCACAACAACTTGTTTCGTATTGTGGTGGATTAATAAATAATATGGGGATAATCCCTCAAGATATGGAGCTTAGAAGGAACATTAGTGCACCTGCATCTTTGTCTGAAACGTTTCTTGACTCATCCTGTTTCACTCAAATTCTACCCTCCTCAACTTGGGAAGGTGATTTCCAAAACCTTTACAATTTGGCGTTTGATCAAGGACGATCAACATCCTTTCCTTCTCAGCCATTTACAGGTCTAGTTGAAGCTAGCAATATGAAGATGGAGATGTAA 1218 0.4278 MLHCLNTSGNLGGGSCSDVTVLERQRFSTRKWQQQQQEEKEQDFSGTGFSPPQGLVMVGGDSTLGEVVAPHSQKPDPGLENGWPELAKFDTGFGSSSGLVPASAISRTCSATEKMISSTCAKENFRKRKAADKSQNSMVVAESDNKDKRIKVSGDEGESKITEQTSNKSIKSNTNKNSKETSVDTSKGSEVQNQKPEYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFTKEVFPACAQSFPTIGMPSDMTNPAYLQLNSAQQLVSYCGGLINNMGIIPQDMELRRNISAPASLSETFLDSSCFTQILPSSTWEGDFQNLYNLAFDQGRSTSFPSQPFTGLVEASNMKMEM* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00561 405 FunFam Basic helix-loop-helix transcription factor 204 276 - -
Rops3g00561 405 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 117 306 IPR024097 GO:0006355
Rops3g00561 405 MobiDBLite consensus disorder prediction 142 162 - -
Rops3g00561 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 205 276 IPR036638 GO:0046983
Rops3g00561 405 Pfam Helix-loop-helix DNA-binding domain 211 258 IPR011598 GO:0046983
Rops3g00561 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Rops3g00561 405 SMART finulus 213 263 IPR011598 GO:0046983
Rops3g00561 405 MobiDBLite consensus disorder prediction 163 193 - -
Rops3g00561 405 CDD bHLH_AtBPE_like 197 282 - -
Rops3g00561 405 MobiDBLite consensus disorder prediction 126 197 - -
Rops3g00561 405 Gene3D - 204 278 IPR036638 GO:0046983
Rops3g00561 405 MobiDBLite consensus disorder prediction 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00561 Rops-Chr3 7002475 7005259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00561 118 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 45.683 1.06e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops3g00561 HLH 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00561 - - gmx:100794256 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00561 3 7002475 7005259 Rops3g00561 3 7002475 7005259 ECH
Rops3g00561 3 7002475 7005259 Rops1g01666 1 35138488 35141166 ECH