Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00552 ATGGAGACAATCCTGGAAGAATCATTTGTTCAGTTGAATGATGATGCGGATGTGAATGAGGAGTGTCCAACGACAGATTCTGATAATGGGGTTCAGAAAGATGGTGTTTATAAGAGTGTGACAGAGTTGAATGATGATGATATCTTACATTTAGAGTTTGGCAGTGAAGAGGAAGCTATAGAATTTTATAAAATGTATGCAATGTATCATGGATTTGTTGTTAGGAAAGATGATGTGTATAGAGATGTGAAGGGGAAAGTTGTGATGCGGCAATTAGTATGCAATCGATCTGGTTTAAGAAACAAGAAACATATTGAAAGGGTGGACAGAATAAGAGACCATAAACCAATCACGCGGACGAATTGTGATGCAAAGTTTAGGGTCCATTTTAACTACAGTAGTCTGAAATGGAGGGTCGTCTCTTTTCAGAATTCACATAACCATCAACTTACACCACCGGAACATGTTCACCTACTACCTGCTTATCGTAGGTTGACATATGCTGATCAAGCTCAAGTTGATAGCTTGCATCATTATGATGTGAGGTCATGTCATATATTGGGTTTCATGGTAGGCCAGAAAGGTGGATATGCAGACTTAGGATTCTGCAAGAAGGACCTATATAATCATCTTGAAAAGCAGAGGCGTGCAAAGGTAGAAGATGGTGATGCATTCGGTGCACTGAGTTACTTGCAAGCTAAGGCAGATAATGATCCCATGCTATTTGCTAAATTCACTACTACTGATGATGGCAGATTACAGAACTTGTTTTGGTCAGATGGATGTAGCAGGACTGACTTTGAATGCTTTGGAGACGTGCTTGCATTTGATACGACATACAAGAAGAACAAGTACAACAAGCTTTTGGATGAAGAATGTAGGATGAGGGATTATGGGATGTTACCCAGAATGGATGAAACACCTTTTGTTTGTCAACCGCCAAGAATAAAGTTGAAACAGTGA 963 0.3956 METILEESFVQLNDDADVNEECPTTDSDNGVQKDGVYKSVTELNDDDILHLEFGSEEEAIEFYKMYAMYHGFVVRKDDVYRDVKGKVVMRQLVCNRSGLRNKKHIERVDRIRDHKPITRTNCDAKFRVHFNYSSLKWRVVSFQNSHNHQLTPPEHVHLLPAYRRLTYADQAQVDSLHHYDVRSCHILGFMVGQKGGYADLGFCKKDLYNHLEKQRRAKVEDGDAFGALSYLQAKADNDPMLFAKFTTTDDGRLQNLFWSDGCSRTDFECFGDVLAFDTTYKKNKYNKLLDEECRMRDYGMLPRMDETPFVCQPPRIKLKQ* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00552 320 PANTHER OS01G0519700 PROTEIN 46 278 - -
Rops3g00552 320 Pfam FAR1 DNA-binding domain 61 151 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00552 Rops-Chr3 6887834 6894444 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Rops3g00552 FAR1 5.2e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00552 - - ccaj:109792835 360.918