Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00532 ATGACTCTTGCACTGCAATTCCCTTCCACTCAAACGGTGGTTTCCACCGCCGCCTCCGTCACCGCCACCGTCATGCTCCTCCGCTCCCTCGCACGAGACTACCTCCCCAGCGAGCTTCACTTCTATATCCGCTCCAAACTCTCCCATTTCCTCACCACATTCTCCTCCGAATTCACTCTCATCATTGACGAGTTCCAAGGCCTCACCTTTAACCACCTCTTCTACGCCGCACAACTCTACCTGAAACCCCAAATCGCCCCCAACACGAAGAGGTTCAAAGCCACCATGCCCCACAAGGAAAACAAAATCTCAGTAATCATGGACCGCAACGAAGAAATCATCGACACCTTCAACGGCGTCGTATTCAAGTGGAAATTGATCTCCCAAAAGATCCCAACCCAGTACATTCAAACCCCAGGTACAAACAAGTACCACTCCACTGCAAAATCCGAGATTCGTTACTTGGAATTGCGGTTTCACAAGAAGCATAAAGACATGGCCTTGGAGGAGTACTTACCCTATGTCATGGAGAAGGCTAAGGAGGTGAGAGAGGAGAGAAAGACGTTGAAGCTTTTCACTTTGAACAATGATAGAACGAGAGTGAGAAGTGGGGAGATGTGGCAGTGTGTGAATCTTGATCATCCTGCTACGTTTGACACAGTGGTGATGGAGATGGAGGTGAAGAAGATGATAATGGAGGATTTGGATAGGTTTTTGGGGAGGAAGGGTTTTTATAGGAGTGTTGGGAAGGCTTGGAAGAGAGGGTATTTGCTATCTGGGCCTCCGGGGACTGGGAAATCAAGCTTGATTGCTGCAATGGCTAATTATCTGAATTTTGATGTTTATGATTTGGAGCTCACTGATCTGAGGAGTAATTCTGAGCTGAGGAAGTTGTTGATTGCAACTGCGAATCGTTCAATATTAGTGGTTGAGGATATTGATTGTTCCCTTCAACTACACCATCGCCTTGCAAAGTATCGTAAACCCATGGTTTTAGGCCCAACCCCTTGGCCACATGGCGATCCAAAGCCTGAGGTGACGTTATCGGGATTCCTCAATTTCATTGATGGGCTGTGGTCTAGCTGTGGGGATGAGAGGATCATAGTGTTCACAACCAATCACAAAGACAAGTTGGACCCTGCTCTGTTGCGCCCTGGCCGTATGGATGTGCACATCGACATGTCTTACTGCAAACCATGTGGGTTCAAAATGCTGGCTTCCAATTACCTTGGGATCACAGAGCACCCACTTTTTGTTGAGGTTGAGAGGTTGCTAGAGACCACGAATGTCACTCCTGCAGAGGTTGGTGAGCTGTTTTTGAAGAATGAAGATCCTGAAGTTGCACTTAGAAGCCTGATGGAGCTCCTCATAGAGAAGGGACCAAATCATGAATCTAAAGCTGTCAAAGCAGATCACACTGCTGAATGA 1428 0.4755 MTLALQFPSTQTVVSTAASVTATVMLLRSLARDYLPSELHFYIRSKLSHFLTTFSSEFTLIIDEFQGLTFNHLFYAAQLYLKPQIAPNTKRFKATMPHKENKISVIMDRNEEIIDTFNGVVFKWKLISQKIPTQYIQTPGTNKYHSTAKSEIRYLELRFHKKHKDMALEEYLPYVMEKAKEVREERKTLKLFTLNNDRTRVRSGEMWQCVNLDHPATFDTVVMEMEVKKMIMEDLDRFLGRKGFYRSVGKAWKRGYLLSGPPGTGKSSLIAAMANYLNFDVYDLELTDLRSNSELRKLLIATANRSILVVEDIDCSLQLHHRLAKYRKPMVLGPTPWPHGDPKPEVTLSGFLNFIDGLWSSCGDERIIVFTTNHKDKLDPALLRPGRMDVHIDMSYCKPCGFKMLASNYLGITEHPLFVEVERLLETTNVTPAEVGELFLKNEDPEVALRSLMELLIEKGPNHESKAVKADHTAE* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00532 475 SMART AAA_5 252 398 IPR003593 GO:0016887
Rops3g00532 475 ProSitePatterns AAA-protein family signature. 366 384 IPR003960 GO:0005524|GO:0016887
Rops3g00532 475 Gene3D - 393 459 - -
Rops3g00532 475 Pfam ATPase family associated with various cellular activities (AAA) 257 395 IPR003959 GO:0005524|GO:0016887
Rops3g00532 475 CDD RecA-like_BCS1 231 394 - -
Rops3g00532 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 442 IPR027417 -
Rops3g00532 475 Pfam Domain associated at C-terminal with AAA 35 127 IPR025753 -
Rops3g00532 475 PANTHER BCS1 AAA-TYPE ATPASE 15 459 - -
Rops3g00532 475 Gene3D - 206 392 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00532 Rops-Chr3 6729920 6732578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00532 254 394 Calmodulin-binding Proteins AT3G56690 26.174 1.46e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00532 K08900 - gmx:100789716 652.514