Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00527 ATGGCTTCCTCAAGTGGAACATCTTCAGGTTCATCTTTGCTTCAGAACTCAGGTTCAGAAGAGGAGTTACAGGCGTTGATGGATCAGAGGAAGAGGAAGAGGATGATATCAAATCGTGAATCGGCAAGGAGATCTCGGATGAGGAAACAGAAGCACTTGGATGATCTTGTGTCTCAAGTGGCTCAGCTCAGGAAAGAGAATCAGCAGATACTCACAAGTGTTAACATCACCACACAACAGTACTTGAGTGTTGAGGCTGAGAACTCAGTGCTGAGGGCTCAGATGGGAGAGCTAAGCCACAGATTAGATTCATTGAACGAGATCATCGAGGTCTTAAATGCCAACAGTGGTGTTTTTGGAGCTGCAGCTGCATCAAGTGCTTTTATTGAGCCAACCAATAGCTTCTTCTTCAACCCATTGAATATGTCCTATATGAATCAGCCAATCATGCCTTCTGCAGACATATTGCAGTGCTGA 477 0.4486 MASSSGTSSGSSLLQNSGSEEELQALMDQRKRKRMISNRESARRSRMRKQKHLDDLVSQVAQLRKENQQILTSVNITTQQYLSVEAENSVLRAQMGELSHRLDSLNEIIEVLNANSGVFGAAAASSAFIEPTNSFFFNPLNMSYMNQPIMPSADILQC* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00527 158 Gene3D - 28 83 - -
Rops3g00527 158 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Rops3g00527 158 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Rops3g00527 158 PANTHER BZIP TRANSCRIPTION FACTOR 44 4 156 - -
Rops3g00527 158 SUPERFAMILY Leucine zipper domain 30 82 IPR046347 GO:0003700|GO:0006355
Rops3g00527 158 MobiDBLite consensus disorder prediction 1 51 - -
Rops3g00527 158 Coils Coil 95 115 - -
Rops3g00527 158 Pfam bZIP transcription factor 30 77 IPR004827 GO:0003700|GO:0006355
Rops3g00527 158 Coils Coil 46 73 - -
Rops3g00527 158 MobiDBLite consensus disorder prediction 24 51 - -
Rops3g00527 158 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Rops3g00527 158 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Rops3g00527 158 MobiDBLite consensus disorder prediction 1 23 - -
Rops3g00527 158 FunFam BZIP transcription factor 28 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00527 Rops-Chr3 6684183 6685627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00527 24 156 bZIP Transcription Factor Family AT4G34590 60.145 1.15e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops3g00527 bZIP_1 2.2e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00527 K25786 - gmx:100101862 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00527 3 6684183 6685627 Rops3g00527 3 6684183 6685627 ECH