Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00526 ATGATGGAAAAGAGAAACTTTTCTGAATTCTTGTCAGAGCTAATAGCTCTGGGTGATGAGGTTGCATCGTTTGCTAAGAATCCTAATCCTGAAATTGAGATAGATGCTTTTACTGAGTTTGCCGTGTTGGTTGAGAAATTTGCTCCAATCTTCAATGATTTGAGGGACAAAAGCACAATCATGGACAAGCCAGCTATTAGAAAGTCATTGGAATCTCTTGAAAATGAGCTTAGCCGTGCTAAAGTTTTGATCAAAAGTCCCTATTTGAAAGAGCCCATCAAACAAATTGAGGACATAACGCATGATCTTGGTCGATCACTAGGCCTGCTGCTTGTGTCTAGCCTTGAAGTGTCCACTGATTTTAGGGAAAAGATTGGTACATTGCAAAAACAGTTGATGAATGCAAGATTTGGTGGGAACATGACTTCGAGTCCAATATCAAGGTTTATCAATGATGTGAAGGTGGGAGGGGAAATAGAAGAGGAAGTAATTAATGTTACTATGGACGATGTTGTACTGCAACTTAAAAATGGTAATGCTGAAGAATTAGCAGTTGCACTTTTAAGACTAAAGAATTTCATCAGGGATGGAGAGCTGTATAGAAGTTTAATTAATGAGGAAGCTGTTGTTTGTATTCTTTTTAATCGTCTAAGTTCATGTAAGGCAAACAGTAGGCTGTGCATTATTCAATTGCTACGAAGTATTGCTTTGGGAAATGATGAGACAAAGGAGAAGATGGTCGATATTCAGTTTTTATCAGCTGTGGTGAAGTCTCTAACAAGGGATGCAGATGAGAGGAGGGAAGCAGTGGGACTGTTGCTAGAACTCTCTGAACTTACTGCAGTTAGACGACAGATTGGAAGGATTAAGGGGTGTATTGTTATGTTAGTTTCTATCCTGAATGGAATTGACACCGTTGCTTCACATGATGCAGCAAAGTTGTTGGATATATTATCCGGTAATACTCAAAATGCACTTCATATGGCTGAGGCTGGTTACTTTCGGCCACTAGTGCAGTATTTGAAGAAAGGGTCTGACATGAATAAGATCCTCATGGCAACAGCACTTTCTAGGTTGGTGCTCACTGATCATTGCAAACTTTCCCTTGGACAAGATGGGGCAATTGAGTCCCTTGTCAAAATGTTTAATTCTGGGAATCTTGAGACCAAGTTATCTGCTCTAAATGCACTGCAAAATCTTTCCAGCTTGACAGAAAATGTTGAACGTCTGATAAGAACAGGAATTGCAGGATATCTGCTGCAACTTCTTTTCTCTGTAACTTCCGTGCTCTTGACTCTACGGGAGCCTGCATCAGCTATCCTTGCAAGAATTTCCCAGTCAGAATCCTTTCTTGTTAATCAAGGTGCAGCTCTACAGATGCTCTCACTTGTGAATCTTACCAGCCCAGTAATTCAAGGTCATCTTTTAGAAGCACTAAACAGCATTGCCTCCCATCCTGGTGCTTCTAAAATGAGAAGAAAAATGAAGGAAAAAGGTTCACTTCAGCTAATTTTACCCCTTCTGAAGGAAACTAACACTCAAATTCGGAGCAAGGCTTTGAATTTGCTGTATACTCTCTCCAAAGATCTAACAGATGAGTTGACAGAACATCTTGATGAAACTTATCTTTTCAACATTGTTAATATTGTCTCATCAACAACTTCGGATAGTGAAAAGGCTGCTGCTGTTGGCATACTGAGTAATCTTCCTGTTAACAATAATAAAGTGACAAATGTACTAAAAAGAGCAAATTTGTTGCCCATTTTGGTATCAATTGTGGATTCAAGCACAGGAAGTAACTCATCCACAAGAAGTAGCATACTGGAGAGTATTGCGGGTGTTATAATTCGGTTCACATGTTCCAGTGACAAGAAACTGCAACTTCTTTCAGCAGAACATGGGGTGATTCCTTTGCTTGTAAAGCTGCTCTCAAGTGGTTCAGCAGTAATAAAATTCAGAGCTGCAACCTCTCTGGCTCAACTATCACAGAATTCTGTGTCTCTTAGGAGGTGTAGGAAGTCTAGGTGGTTGTGTGTTTCTCCCTCTGTGGATGCATATTGTGAAGTTCATGATGGCTATTGCTCTGTGAACAGCACATTTTGTCTGATCAAGGCAGGTGCTGTTTCTCCACTTATCCAAATATTGGAAGATAAGGATGGGGAAGCAGTGGAAGCTGCTCTAAGTGCCCTTTCAACTCTCTTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTGCATAGCTAAATTGTCAGGTGCAGAGGCTATTGTAAAACTTTTAGAAGCAGGTAATGTGAAGGTTCAAGAAAAAGCACTATGGATGTTGGAGAGAATATTCAGGGTTGAAGAACACAGAGTAAAATATGGAGAATTCGCTCAGTTGGTTCTTGTTGATCTGGCACTGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTGGCAGTGATGGAGCTCCTGCAAGCTCAATCTAGTTATTTCTGA 2484 0.4022 MMEKRNFSEFLSELIALGDEVASFAKNPNPEIEIDAFTEFAVLVEKFAPIFNDLRDKSTIMDKPAIRKSLESLENELSRAKVLIKSPYLKEPIKQIEDITHDLGRSLGLLLVSSLEVSTDFREKIGTLQKQLMNARFGGNMTSSPISRFINDVKVGGEIEEEVINVTMDDVVLQLKNGNAEELAVALLRLKNFIRDGELYRSLINEEAVVCILFNRLSSCKANSRLCIIQLLRSIALGNDETKEKMVDIQFLSAVVKSLTRDADERREAVGLLLELSELTAVRRQIGRIKGCIVMLVSILNGIDTVASHDAAKLLDILSGNTQNALHMAEAGYFRPLVQYLKKGSDMNKILMATALSRLVLTDHCKLSLGQDGAIESLVKMFNSGNLETKLSALNALQNLSSLTENVERLIRTGIAGYLLQLLFSVTSVLLTLREPASAILARISQSESFLVNQGAALQMLSLVNLTSPVIQGHLLEALNSIASHPGASKMRRKMKEKGSLQLILPLLKETNTQIRSKALNLLYTLSKDLTDELTEHLDETYLFNIVNIVSSTTSDSEKAAAVGILSNLPVNNNKVTNVLKRANLLPILVSIVDSSTGSNSSTRSSILESIAGVIIRFTCSSDKKLQLLSAEHGVIPLLVKLLSSGSAVIKFRAATSLAQLSQNSVSLRRCRKSRWLCVSPSVDAYCEVHDGYCSVNSTFCLIKAGAVSPLIQILEDKDGEAVEAALSALSTLLQDEIWEGGVNCIAKLSGAEAIVKLLEAGNVKVQEKALWMLERIFRVEEHRVKYGEFAQLVLVDLALKSDSRLKSTVAKVLAVMELLQAQSSYF* 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00526 827 Gene3D - 678 822 IPR011989 -
Rops3g00526 827 Coils Coil 393 413 - -
Rops3g00526 827 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 373 415 IPR000225 GO:0005515
Rops3g00526 827 SMART arm_5 623 663 IPR000225 GO:0005515
Rops3g00526 827 SMART arm_5 695 735 IPR000225 GO:0005515
Rops3g00526 827 SMART arm_5 321 361 IPR000225 GO:0005515
Rops3g00526 827 SMART arm_5 239 278 IPR000225 GO:0005515
Rops3g00526 827 SMART arm_5 488 528 IPR000225 GO:0005515
Rops3g00526 827 SMART arm_5 573 620 IPR000225 GO:0005515
Rops3g00526 827 SMART arm_5 739 779 IPR000225 GO:0005515
Rops3g00526 827 SMART arm_5 362 402 IPR000225 GO:0005515
Rops3g00526 827 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 171 827 - -
Rops3g00526 827 Gene3D - 309 675 IPR011989 -
Rops3g00526 827 SUPERFAMILY ARM repeat 167 424 IPR016024 -
Rops3g00526 827 Gene3D - 160 308 IPR011989 -
Rops3g00526 827 SUPERFAMILY ARM repeat 337 782 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00526 Rops-Chr3 6638469 6642651 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00526 178 827 U-box Gene Family AT1G76390 29.185 5.36e-48 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00526 K08332 - gmx:102659538 1188.71