Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00523 ATGGAGAGGAATAAGGTGCTAGTGATGATGTACTCAGTCCTATTATGCTTCATGCCTTTGTTATCTAGACAGAATAATATTACTATTGCTCAGAATCAACATATCCAAAATGATGCGACCCTGGTTTCTGAAAGGGGAACCTTCGAAGCTGGATTCTTCAGTTTTGGAAATTCACAACGCCAATACTTTGGTATATGGTACAAGAACATATCACCAAGGACTATTGTCTGGGTAGCCAACAGAGATGCCCCAGTTGAAAACTCAACAGCAACGTTGAAGCTTACTGATCAAGGGAACCTCCTAATTCTTGATGGCTCAAAGGGTATAGTTTGGTCCTCCAACACATCAAGAACTGCAGCAGAGAAACCTTTCATGCAGCTTCTAGACTCGGGAAACCTTGTTGTGAAAGATGGAGAGAACCTTATATGGGAAAGCTTTGATTATCTAGGTGACACTTTCCTTGCAGGAATGAAGATTAAGAGCAATTTAGTAAGTGGTCCTTATAGGTTTCTGACATCATGGAGAAACACAGAAGACCCTGCTGTCGGAGAGTTTTCATGTCGTGTAGATACTCGGGGCTTTCCTCAACTAGTTATCACAGAGAGAGCAACTGTAACGAGCAGATCAGGCCCGTGGACTGGCAATGCTTTTGCTGGAGCTTCTTGGTTAAGACTAAAGAAAATCTTGAAAATCTCTTTTCAGCTTACTGGCCATGAAATCTCTTACGAATATCAAACCTTAAATCGTTCAATTATTACCAGAATGGTGCTCAACCCGTCAGGCACTACACAACGTTTGATATGGTCAGATAGGACCCAAAATTGGGAGATCATAGCTACCTATCCCATGGACCAATGTGAATATTATGCCTTTTGTGGTGCTAATACCAAGTGTAGTTCTGCTAACAATCCCATTTGTGAATGCTTGGAAGGTTTCACACCCAAATTTCAAGGAAAATGGAAATCATTAGATTGGACTGGTGGATGTGTTCCAAAGAAAAATTTAAGTTGTCAAAATGGAAATGGCTTTCTGAAATACACAGGAGTGACGCTGCCAGACACGTCTTCTTCCTGGTTTGTCATGAACAAGAGCCTCGATGAATGTGAGACTTTTTGTTTGCAAAACTGCTCTTGCACAGCATATGCATATTTAGATAATTATGTTGGTAGGAGGGTTTTCTTGATTTGGCTTGGTGACATTGTGGACTTGAGAAAACACCCTGACCAAGGACAGGAGATCTACATACGAGTGGCTGCTGCATCGGAGCTAGATCATAGAAGGAATAAGAGGAACTTTAATACAAAGAAGCTTGCAGGGATTATGGTAGGAATCATCATATGCATAACAATCCTTGGATTGGTCACATTCACTTGTATACAGAGGAAGAAGAATGAGAGGCCAGGAACTATAAACCACTGGAAGGACAAGAGAGGGGACGAAGACATTGATTTGGCAACAATAATTGATTTGCTAACCATCTCTAATGCTACAAATCACTTTTCAGAAAGTAACAAATTAGGAGAAGGTGGCTTTGGACCAGTATACAAGGGCTTGTTAGCAGATGGGCAGCAGATTGCCGTGAAGAGGCTTTCTAATACTTCGGGACAGGGAGTAGAAGAGTTCAAAAATGAAGTCATGTTAATAGCAAGACTTCAGCATCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCATCAAGATGAAAAGTTGTTGATCTATGAATTCATGCACAACAGAAGCTTGGATTACTTCATTTTTGATTCAACACGAAGTAAACTACTAGATTGGAATAAGCGGTTCCAAATTATTGACGGGATTGCTCGAGGGCTTCTTTATCTTCACCGTGACTCAAGATTAAGAATTATCCACAGAGACCTCAAAACCAGTAACATTCTTCTTGATGATGAAATGAACCCAAAGATATCTGATTTTGGTTTGGCGAGAACATTTATAGGAGATCAAATTGAGGCTCAAACTAAGAGAGTTATGGGAACATATGGTTATATGTCTCCTGAGTATGCAGTGCATGGATTTTTTTCAATCAAATCCGATGTCTATAGCTTTGGTGTAATTGTACTTGAGATAATTAGTGGGAAGAAGATGCGGAGATTTCGTGACCCTCACCATCATCTTAATCTTCTTGGTCATGCATGGAGACTATGGATTGAAGAAAGAGCATTAGAGCTAATAGATGAAATAGATTCAGTAATCCCATCCGAAATATTGAGATATATTCATGTGGGTCTATTATGCGTACAACAGAGACCAGAAAATAGGCCTAACATGTCATCTGTTGTTTTAATGTTGAATGGCGAAAAGGAACTCCCTAAGCCAAGTCTGCCCGCGTTTTACACTGGAATTGATGATCCAAGTTGGTCAGTATCTTCTTCAAGAAATGGTAAAAGGTATTCAGCAAATGAAGTTAGCGTCTCATTACTCGAGCCTAGATAA 2451 0.3998 MERNKVLVMMYSVLLCFMPLLSRQNNITIAQNQHIQNDATLVSERGTFEAGFFSFGNSQRQYFGIWYKNISPRTIVWVANRDAPVENSTATLKLTDQGNLLILDGSKGIVWSSNTSRTAAEKPFMQLLDSGNLVVKDGENLIWESFDYLGDTFLAGMKIKSNLVSGPYRFLTSWRNTEDPAVGEFSCRVDTRGFPQLVITERATVTSRSGPWTGNAFAGASWLRLKKILKISFQLTGHEISYEYQTLNRSIITRMVLNPSGTTQRLIWSDRTQNWEIIATYPMDQCEYYAFCGANTKCSSANNPICECLEGFTPKFQGKWKSLDWTGGCVPKKNLSCQNGNGFLKYTGVTLPDTSSSWFVMNKSLDECETFCLQNCSCTAYAYLDNYVGRRVFLIWLGDIVDLRKHPDQGQEIYIRVAAASELDHRRNKRNFNTKKLAGIMVGIIICITILGLVTFTCIQRKKNERPGTINHWKDKRGDEDIDLATIIDLLTISNATNHFSESNKLGEGGFGPVYKGLLADGQQIAVKRLSNTSGQGVEEFKNEVMLIARLQHRNLVKLLGCSIHQDEKLLIYEFMHNRSLDYFIFDSTRSKLLDWNKRFQIIDGIARGLLYLHRDSRLRIIHRDLKTSNILLDDEMNPKISDFGLARTFIGDQIEAQTKRVMGTYGYMSPEYAVHGFFSIKSDVYSFGVIVLEIISGKKMRRFRDPHHHLNLLGHAWRLWIEERALELIDEIDSVIPSEILRYIHVGLLCVQQRPENRPNMSSVVLMLNGEKELPKPSLPAFYTGIDDPSWSVSSSRNGKRYSANEVSVSLLEPR* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00523 816 CDD STKc_IRAK 506 771 - -
Rops3g00523 816 SUPERFAMILY Protein kinase-like (PK-like) 488 794 IPR011009 -
Rops3g00523 816 Gene3D Phosphorylase Kinase; domain 1 469 575 - -
Rops3g00523 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Rops3g00523 816 SMART serkin_6 500 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00523 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 756 - -
Rops3g00523 816 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Rops3g00523 816 ProSiteProfiles Protein kinase domain profile. 500 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00523 816 SMART ntp_6 338 417 IPR003609 -
Rops3g00523 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 777 - -
Rops3g00523 816 Pfam D-mannose binding lectin 74 175 IPR001480 -
Rops3g00523 816 Pfam Protein tyrosine and serine/threonine kinase 503 767 IPR001245 GO:0004672|GO:0006468
Rops3g00523 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 463 575 - -
Rops3g00523 816 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Rops3g00523 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 23 146 - -
Rops3g00523 816 Pfam PAN-like domain 337 403 IPR003609 -
Rops3g00523 816 CDD PAN_AP_plant 334 418 - -
Rops3g00523 816 PIRSF SRK 2 816 IPR024171 GO:0004674
Rops3g00523 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 75 180 IPR036426 -
Rops3g00523 816 ProSiteProfiles Bulb-type lectin domain profile. 26 148 IPR001480 -
Rops3g00523 816 CDD B_lectin 32 148 IPR001480 -
Rops3g00523 816 Gene3D Transferase(Phosphotransferase) domain 1 576 777 - -
Rops3g00523 816 SMART blect_4 32 149 IPR001480 -
Rops3g00523 816 Gene3D - 21 146 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00523 Rops-Chr3 6626084 6629710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00523 430 783 Receptor kinase-like Gene Family AT4G23230 51.821 2.95e-119 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops3g00523 PK_Tyr_Ser-Thr 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00523 - - lja:Lj3g3v3375760.2 1193.72