Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00521 ATGAGGAGCGTCCATGTCTACCGTCAATTGAATGGAGAGGAAAGCAAAGTTGAAGTTGAAAGGGAGTTTGTGTTTTCAGAAAGTGGTTCCTATTTGGAAATGCAGGCTACCCCAAATCTTAGATTGCTAAAATTTCGTGTTTCTGAAGTTTTTGAAGGGTACCAAAATGTAGTGTGGCTTTGTATCTTTGCATTTCACGCCGATCAATTTGAGGAGATCTTAGAGGCTGTTGTCATAACTGACAAGAACACTGGAAGATCAAAAGGATATGGTTTTGTGACCTTCAATGACCCAAATTCTGTAATAATAGCTTCCCAGAATCCCTCTCCTGTGAGAGCTAATTGTAATCTTGCATCTCTGGGTGCAGAAAATTTTGATCCATCTAAAACGAGTCAGAACGAAGCATCAAGAAAAAGTTTGGAGGGAGCCAATGATACCTCCACTAATATTCAAGATTGTTCAAATGAGTACAAAAGGCTAAAGGACCACTTGAAGCACTATGCCCAAAGTTGTAGGGTTCTACTAATCCAACACAACAGCAGGCCCATTCAAGAGGATCAGTGGGCCAATGAAGATGATGGTGGTGATCAGAGTGATACTGCTCAGGACCAAAGCTGTCGAGGGGAACTTCAAGCCTTCAAAAATAGAACAAGATCATGCCTTCCTGCTGCAGCTGCTTTTCTGGTTCAAACAATCCTTCAGATAGTGCCAAAGATGCTGAGCAAAAGGCAGCAACTTGCTCAGAATAGATACAAAGCAGAACGATACGAATTATTCCTTAGGCCAGAGCCCACAACCTCTAATGATCAAGATAGTAAAAAGAAGAAGAACAATGAAAAGAGTGCGTTGTTCAAGCGCAAAAGGGATATGTTTGAGATGTCAACGACATGGTCACAGAGCCAAGAACTGCCAAAGGTGCAAGATGGCACCAACGATGGAAAATATTACTATAATTACAATGAAACTAGCTACTCACTTGCAAAATATCCCCACCCTCTTCAAGAAGGAGGGACAAAGTTTGCTAACAATTCTGTTGGTAATCAATGCAGACACTTAAGTAAAAATTGTCCTCAAAATGCTCATGGCATTTATCCAAAGGGTGGTTGTTGTAAAATATGTGGTTGTGTGACACATTTGGCACACATTGCCCTGACAAGGGGAAAAAAGATTTGTTGCTACTAA 1182 0.4095 MRSVHVYRQLNGEESKVEVEREFVFSESGSYLEMQATPNLRLLKFRVSEVFEGYQNVVWLCIFAFHADQFEEILEAVVITDKNTGRSKGYGFVTFNDPNSVIIASQNPSPVRANCNLASLGAENFDPSKTSQNEASRKSLEGANDTSTNIQDCSNEYKRLKDHLKHYAQSCRVLLIQHNSRPIQEDQWANEDDGGDQSDTAQDQSCRGELQAFKNRTRSCLPAAAAFLVQTILQIVPKMLSKRQQLAQNRYKAERYELFLRPEPTTSNDQDSKKKKNNEKSALFKRKRDMFEMSTTWSQSQELPKVQDGTNDGKYYYNYNETSYSLAKYPHPLQEGGTKFANNSVGNQCRHLSKNCPQNAHGIYPKGGCCKICGCVTHLAHIALTRGKKICCY* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00521 393 MobiDBLite consensus disorder prediction 259 282 - -
Rops3g00521 393 MobiDBLite consensus disorder prediction 186 205 - -
Rops3g00521 393 Gene3D - 62 112 IPR012677 -
Rops3g00521 393 MobiDBLite consensus disorder prediction 267 282 - -
Rops3g00521 393 SUPERFAMILY RNA-binding domain, RBD 69 106 IPR035979 GO:0003676
Rops3g00521 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 101 IPR000504 GO:0003723
Rops3g00521 393 PANTHER OS04G0555800 PROTEIN 302 388 - -
Rops3g00521 393 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00521 Rops-Chr3 6585438 6590581 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00521 1 65 AtRKD Transcription Factor Family AT4G35590 41.538 1.71e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00521 - - gmx:121174300 137.502