Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00520 ATGAGAAGCGCTACGTGTTATATGTTAGTGCTAGTGTTGAGTGTTACCTTTGTTTGGTTCCACGTTGCAGTGTGTTCTTCATTCAGTGATCTAGACGCGCTGCTGAAGCTGAAGGAATCGATGAAGGGAGAGAAAGCGAAAGATGATGCACTGGAAGATTGGAAGTTTTCGACGTCGATTTCTGCACACTGTTCATTTTCTGGGGTAATATGTGACCAAAACCTGAGAGTGGTTGCTCTGAACGTGTCGTTTGTTCCACTGTTCGGGCACATTCCACCGGAGATTGGATTGTTGGACAAACTGGAGAGCCTCACCATCACCATGGCCAACCTCACAGACCAGCTTCCCAACGAGCTCGCTAACCTCACTTCCCTTAAGGTCCTCAACATCTCCCACAACGTCTTCGCCGGCCACTTCCCCGGCAACATCACACTCCACATGCCCAAACTGGAGGTCCTCGACGCCTATGACAACAGCTTCAGTGGACAACTTCCTGAGGAAATCGTCAAACTCCCGAACCTCAAGTACCTCCATCTCGCAGGGAACTATTTCTCCGGCACGATACCGGAGAGTTACTCGGAATTTCAGAGCTTGGAATTTTTGGGCTTGAACATGAACAGCTTAACGGGAAAGATTCCCAAGAGCTTGGCTAACTTAAAGACGCTGAAGGAACTTCATCTCGGTTACCTCAATGTTTATGAAGGTGGAATCCCACCGGAGCTTGGTTCCATGAAATCTCTGCAAAAGCTTGACTTGTCTAGCTGCAACCTCAGTGGCGAGATTCCACCGAGCTTGAGCAATTTGAAAAACCTGAACACCTTGTTCTTGCAAATTAACAACCTCACCGGAACTATTCCGCCGGAGATTTCTGCCATGACGAGCCTCATGTCGTTGGATCTCTCCATCAACGACCTCACCGGAGAGATTCCAGAGAGCTTCTCCAAGCTCAAGAACCTCACTCTCTTGAACTTCTTCCAGAACAAGCTCCGTGGTCCTCTCCCTTCCTTCATCGGCGACCTTCCGTACCTGGAAACGCTTCAGGTTTGGGAGAACAACTTCTCCTTCGTGCTGCCTCAGAATCTAGGCCAAAATGGGAAGCTCATATACTTCGACGTCACCAAGAACCACCTCACCGGATTGATCCCTCCTGATTTATGCAAAAGTAGGAGGTTGAAAACGTTCATCATCACCGATAACTTCTTCCACGGTCCATTCCCTGAAGATATCGGCGAGTGCAAGTCACTTCTCAAGATCCGCGTCGCCAATAACTACCTAGACGGGCCGGTTCCCCCGGGGATTTTCCAACTACCTAATGTCACGATAATTGAACTGGGCAATAACCGTTTCAACGGCCAACTACCTTCCGTGATTTACGGCGATTATCTCGGGATTCTAACGCTCTCCAACAACTTATTCACGGGAAGAATACCCGCAGCGTTGAAAAACTTCAGAGCATTGCAGACTTTGTCTCTGGATGCTAATGAGTTCGTTGGTGAAATCCCTGGGGAAGTTTTTCAGTTACCAATGCTGACGAAGATCAACATAAGCGGCAACAACTTGACAGGTCCAATCCCAACGATGGTTACTCACTGCGTTTCACTGACTGCCGTTGATCTCAGCGGGAACATGCTGGTTGGTGAGGTTCCGAAGGGTATGAAGAATTTGATGGACTTGAGCATTTTGAATCTGTCTCGGAACTTTGTTTCAGGGCCAGTCCCTGACGAGATTCGATTCATGACGAGTCTCACGACGTTGGATCTCTCCTACAACAATTTCACCGGCAGAGTCCCCACCGGTGGTCAGTTCCTGGTGTTCAACGACAGGTCGTTTGCCGGGAACCCCAACCTCTGTTTCCCTCACCAGTCCTCTTGTCCTTCCTCCTTCCTCTACCCGTCAACCAAAAGCCGCACCAAAACGACGAGAGTCAGAGCCATCGTTGTTGGGATTGCACTGGCCACCGCCGTTCTGCTGGTGCTGGTGACTGTTTACGTGACGAGGAAGAGAAAGCTCCACAGATCAAAAGCATGGAAGTTGACGGCGTTCCAGAGATGGGACTTAAAAGCGGACGATGTGGTGGAGTGTCTGAAAGAAGAGAACATAATAGGGAAAGGAGGAGCAGGGATCGTGTACAGAGGGTCCATGCCAAACGGAACGGACATAGCCATAAAGCGTTTGGTTGGACAAGGAAGTGGAAGAAACGATTACGGATTCAAGGCTGAGATAGAAACACTTGGAAGGATAAGGCACCGGAATATAATGAGGCTTCTTGGGTACGTCTCCAACAAGGACACCAACTTGTTGTTATATGAGTACATGCCAAATGGTAGTTTAGGGGAGTGGTTGCATGGCTCTAAAGGTGGACACTTGAGGTGGGAAATGAGGTATAGAATTGCAGTGGAAGCAGCTAAGGGATTGTGCTATTTGCACCATGATTGTTCTCCTCTGATTATTCACAGAGATGTCAAGTCCAATAATATATTGCTCGATGCAGATTTTGAAGCCCATGTAGCTGATTTTGGACTTGCCAAGTTCTTGTACGACCCAGGAGCCTCTCAGTCCATGTCATCCATCGCTGGCTCCTACGGTTACATTGCTCCAGAGTATGCTTACACACTGAAAGTGGATGAGAAAAGTGATGTGTATAGTTTTGGAGTAGTGCTGTTAGAACTGATCGTGGGAAGAAAACCAGTGGGTGAGTTTGGAGATGGGGTTGACATCGTCGGATGGGTCAATAAAACCAAATCAGAGCTATCTCAGCCGTCCGATGCAGCATTAGTGTTGGCAGTGATGGACCCACGGCTTAGTGGGTACCCCTTGACAAGTGTCATCCACATGTTCAACATAGCTATGATGTGTGTTAGGGAAATGGGACCCACCAGGCCCACCATGAGGGAAGTAGTTCATATGCTCACTAATCCTCCTCAGTCTACCACTCACAACCTAATTAATCTCTAG 2955 0.4846 MRSATCYMLVLVLSVTFVWFHVAVCSSFSDLDALLKLKESMKGEKAKDDALEDWKFSTSISAHCSFSGVICDQNLRVVALNVSFVPLFGHIPPEIGLLDKLESLTITMANLTDQLPNELANLTSLKVLNISHNVFAGHFPGNITLHMPKLEVLDAYDNSFSGQLPEEIVKLPNLKYLHLAGNYFSGTIPESYSEFQSLEFLGLNMNSLTGKIPKSLANLKTLKELHLGYLNVYEGGIPPELGSMKSLQKLDLSSCNLSGEIPPSLSNLKNLNTLFLQINNLTGTIPPEISAMTSLMSLDLSINDLTGEIPESFSKLKNLTLLNFFQNKLRGPLPSFIGDLPYLETLQVWENNFSFVLPQNLGQNGKLIYFDVTKNHLTGLIPPDLCKSRRLKTFIITDNFFHGPFPEDIGECKSLLKIRVANNYLDGPVPPGIFQLPNVTIIELGNNRFNGQLPSVIYGDYLGILTLSNNLFTGRIPAALKNFRALQTLSLDANEFVGEIPGEVFQLPMLTKINISGNNLTGPIPTMVTHCVSLTAVDLSGNMLVGEVPKGMKNLMDLSILNLSRNFVSGPVPDEIRFMTSLTTLDLSYNNFTGRVPTGGQFLVFNDRSFAGNPNLCFPHQSSCPSSFLYPSTKSRTKTTRVRAIVVGIALATAVLLVLVTVYVTRKRKLHRSKAWKLTAFQRWDLKADDVVECLKEENIIGKGGAGIVYRGSMPNGTDIAIKRLVGQGSGRNDYGFKAEIETLGRIRHRNIMRLLGYVSNKDTNLLLYEYMPNGSLGEWLHGSKGGHLRWEMRYRIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLYDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIVGRKPVGEFGDGVDIVGWVNKTKSELSQPSDAALVLAVMDPRLSGYPLTSVIHMFNIAMMCVREMGPTRPTMREVVHMLTNPPQSTTHNLINL* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00520 984 Gene3D Ribonuclease Inhibitor 235 336 IPR032675 -
Rops3g00520 984 Gene3D Ribonuclease Inhibitor 28 188 IPR032675 -
Rops3g00520 984 SUPERFAMILY RNI-like 261 599 - -
Rops3g00520 984 Gene3D Phosphorylase Kinase; domain 1 661 771 - -
Rops3g00520 984 SUPERFAMILY Protein kinase-like (PK-like) 691 970 IPR011009 -
Rops3g00520 984 Pfam Leucine Rich repeat 580 594 IPR001611 GO:0005515
Rops3g00520 984 FunFam Leucine-rich repeat receptor-like protein kinase 28 190 - -
Rops3g00520 984 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 983 - -
Rops3g00520 984 SMART serkin_6 695 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00520 984 Gene3D Transferase(Phosphotransferase) domain 1 772 981 - -
Rops3g00520 984 Pfam Protein tyrosine and serine/threonine kinase 696 969 IPR001245 GO:0004672|GO:0006468
Rops3g00520 984 Pfam Leucine Rich Repeat 246 268 IPR001611 GO:0005515
Rops3g00520 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Rops3g00520 984 Pfam Leucine rich repeat 485 544 IPR001611 GO:0005515
Rops3g00520 984 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 232 336 - -
Rops3g00520 984 Gene3D Ribonuclease Inhibitor 341 628 IPR032675 -
Rops3g00520 984 Gene3D Ribonuclease Inhibitor 189 234 IPR032675 -
Rops3g00520 984 SUPERFAMILY L domain-like 57 281 - -
Rops3g00520 984 SMART LRR_typ_2 436 460 IPR003591 -
Rops3g00520 984 SMART LRR_typ_2 579 602 IPR003591 -
Rops3g00520 984 SMART LRR_typ_2 171 195 IPR003591 -
Rops3g00520 984 SMART LRR_typ_2 340 364 IPR003591 -
Rops3g00520 984 SMART LRR_typ_2 244 268 IPR003591 -
Rops3g00520 984 SMART LRR_typ_2 292 315 IPR003591 -
Rops3g00520 984 SMART LRR_typ_2 122 146 IPR003591 -
Rops3g00520 984 SMART LRR_typ_2 483 507 IPR003591 -
Rops3g00520 984 Pfam Leucine rich repeat N-terminal domain 29 72 IPR013210 -
Rops3g00520 984 ProSiteProfiles Protein kinase domain profile. 695 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00520 984 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 627 - -
Rops3g00520 984 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 234 971 - -
Rops3g00520 984 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 664 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00520 Rops-Chr3 6570706 6574000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00520 25 982 Receptor kinase-like Gene Family AT1G75820 63.333 0.0 1236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops3g00520 PK_Tyr_Ser-Thr 6.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00520 K00924 - gmx:732625 1536.93