Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00516 ATGGTCCAAAAAAAGGTTCCCAGCGAAAATGGTATCCAAGCTGATCATGTTAAATCTGATAAGCGCTTGGCAAACCTGAAGCCAGCTTCTTCTCAGCACCAAGATGGCAAAAGCAGAGGAACTGATAAGATGAAGAAAATGATGAAGTCAAGGTCAATTAAGCTTCCTGATTTGGAGGCCCATCAAACACTAGCTCCAAGGAGGAGCTTATCCCAACCAAGAAAGCCACCACCTCTTCATGTTCCAACCACTGCAGCATCCCCACAAGAGCATGAGTCTTTTGAGAGAAGGTCACCCAATTACATGAAGCCCACCATAAGTTCAGATGCAAAAAACGAGCTTTTGCCAGTGAGTCTTCCAAATACCCAATCTGGTTCAGATGGTAAGAATCTACCACAAAAATGTTTGAGTGATTCAAAAGCTAGTTCTGTTTCTAGCAAAAAACCTGCGAAAACTTTGTCAAGATCGTCTAGCTTGAATTTGGTGAGAACACTAACAAAGACTCCAAGCTTCAAGCCTTGTAAAGCTTGTCCGAAAAAATCTACCGCAGCAGTTCTGCGTTCAGATGTTAATGCACCAGAGAGACCTACCTGCTCTTCAACCTTGAAAGACTCCAAGTTCCCTGCATACCTCATGCTTAATCCTGGGGGTACTGAGTCTGAGCGAGCTTCAGTCATGAAGGTTTGCCCATATACATATTGTTCTCTCAATGGCCATCACCGTGCTCCTTTGCCTCAATTGAATAGCTTCATGTCAGCAAGGAGGCATCTTTTGAAAACTCAAAAGAGTATAAAGTTGGAAGCTCCTCGAAGATTGCAGGTGCCCCGTGAGACAAGGAAGGAATCTGATATTGAGCAGGTTGTCTTTGACAGAAAACCTGCAAGTAATGAAGCTGATAGGAGTAATCCAATAATCCCTCCCTTGGCACAAGAAATTGGTATGGGTTTCTTCATTGAAATCTATGCCAAGGAAAAGGAAGGAGCGGACGAAATGGGAAGATTTGACTCTGTCAAACACCTTGAGAATCAAGAAGATACCAAGTTTGCAATTGAGGAGAATGGCAATTCAGCAGAAGAGGATAGTGTAAAGAAAGTTACTCCGAGCATACCTCATGATCTCCCCAAGCCTGAGATTAATCTTGAGGATGATTTCAAAAACAACTTTGATGCTGCTATAATTGAAACAGATACAAAGGGGAGCTTTCATCAAGAAAAAAATGCTGAAGATGCAGATGAAAACCATCCAACTAGCTGGTTTCATGAAGAAATGTGTACGGGAAGCTACAGCCGTGAGGTTAGCCATGATGGGAAACACATGCAGAATATTGAATTAGACGATTCTGATTCCCATACTGATATGGAGTGGGAGGAGGAACAATTTTGTGCAGTTGAACAAGAAGAAGACACGGATTCTTCCATCATCATGCAGGAGGAGACTGACTCAGAATTTGATTCCTTATCAGAGAGTTCGCCTGATACATCTGACATGTGGTTAAATGACATCCTTAGCAACCATCATGTGGACATTCTGGTTGAAGAAGCACCCCAAGCAGCCAAAGAAGAGAAAAGCAACTGTTTTAAAGCACATCCTCATGAAACTAATTCTGTCCTGGAAGACACAAGTGAAAGCATCGAGTTCAAGACTCAAGAAACTGATTATCCATCCAATGGCACAAGTTATGAGTATGACCAATCTTCTTTGACAGAGGAAGTATTTCAGCATCTGATGAACAGAGAAGATAATAAAAGAGAAGGCGAAAAACATGTGGATGATGGGGCCAGTTGTGCCTCAATGGTACTTGATGAAGATACAATAGAAAATAGTGAAGGCAACAAGATCAGTGAACCTTGTGAGATCGATGAGAGCCGTGAAAATAACAATACAAGCCTAAAGAATGATGATAAAGGAATTAACCAGGAGAACCAAATTCACTCGTCTGATGTGCCCAAAGAAAGCACCACTATTGTTCAGGACCAGGAATTAATGAAGGAAGATCAAGTTACAGCTAGTAAGTTCCAGACCACAAGCTGCATAGGTGGTGAAGAGCAGAACACAAGCAAGAATTGGCAATGGGCAGCTAGGCGCAAGAGACCTGTGCCAGATGTTGAGGAAATGAGAAAGATAAACCCACGAAAGCCAAATTTTCTGCCCTTGGTTCCTGACCCAGAACCAGAAAAGGTTGACCTGAAGCATAAAACGATGGATGAAAGGAAAAATGCAGAGGAATGGATGCTTGATTTTGCACTCAGACAAGCGGTCACAAAACTTGCTCCAGCTGGGAAAAGGAAGGTGTCATTGCTTGTTGAAGCTTTTGAATCAGTAATTTCAGTACCCAAATGCGAAACCCGTATGAGAAACGATTCACCATTTGGTCAAGCAAGACCTATTCAAGCTTGTAGCTAA 2403 0.4236 MVQKKVPSENGIQADHVKSDKRLANLKPASSQHQDGKSRGTDKMKKMMKSRSIKLPDLEAHQTLAPRRSLSQPRKPPPLHVPTTAASPQEHESFERRSPNYMKPTISSDAKNELLPVSLPNTQSGSDGKNLPQKCLSDSKASSVSSKKPAKTLSRSSSLNLVRTLTKTPSFKPCKACPKKSTAAVLRSDVNAPERPTCSSTLKDSKFPAYLMLNPGGTESERASVMKVCPYTYCSLNGHHRAPLPQLNSFMSARRHLLKTQKSIKLEAPRRLQVPRETRKESDIEQVVFDRKPASNEADRSNPIIPPLAQEIGMGFFIEIYAKEKEGADEMGRFDSVKHLENQEDTKFAIEENGNSAEEDSVKKVTPSIPHDLPKPEINLEDDFKNNFDAAIIETDTKGSFHQEKNAEDADENHPTSWFHEEMCTGSYSREVSHDGKHMQNIELDDSDSHTDMEWEEEQFCAVEQEEDTDSSIIMQEETDSEFDSLSESSPDTSDMWLNDILSNHHVDILVEEAPQAAKEEKSNCFKAHPHETNSVLEDTSESIEFKTQETDYPSNGTSYEYDQSSLTEEVFQHLMNREDNKREGEKHVDDGASCASMVLDEDTIENSEGNKISEPCEIDESRENNNTSLKNDDKGINQENQIHSSDVPKESTTIVQDQELMKEDQVTASKFQTTSCIGGEEQNTSKNWQWAARRKRPVPDVEEMRKINPRKPNFLPLVPDPEPEKVDLKHKTMDERKNAEEWMLDFALRQAVTKLAPAGKRKVSLLVEAFESVISVPKCETRMRNDSPFGQARPIQACS* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00516 800 SMART CaM_binding_2 663 776 IPR012417 GO:0005516
Rops3g00516 800 MobiDBLite consensus disorder prediction 604 652 - -
Rops3g00516 800 MobiDBLite consensus disorder prediction 354 381 - -
Rops3g00516 800 Pfam Plant calmodulin-binding domain 683 776 IPR012417 GO:0005516
Rops3g00516 800 MobiDBLite consensus disorder prediction 272 297 - -
Rops3g00516 800 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 1 776 IPR044681 GO:0005516
Rops3g00516 800 MobiDBLite consensus disorder prediction 631 652 - -
Rops3g00516 800 MobiDBLite consensus disorder prediction 100 158 - -
Rops3g00516 800 MobiDBLite consensus disorder prediction 272 305 - -
Rops3g00516 800 MobiDBLite consensus disorder prediction 1 158 - -
Rops3g00516 800 MobiDBLite consensus disorder prediction 605 630 - -
Rops3g00516 800 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00516 Rops-Chr3 6535860 6538262 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00516 681 774 Calmodulin-binding Proteins AT2G38800 56.383 2.49e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00516 - - gmx:102670203 1058.9