Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00512 ATGGGAGAGGTAGAGGGGCATGGAGGTTGTTGCCCTCCAATGGATCTGTTCCGTTCGGAACCCATGCACCTTGTTCAGCTCATCATTCCCATCGAATCTGCTCACCGCACTGTCTCCTACCTCGGTGACCTTGGCCTCCTTCAGTTCAAAGATCTAAATTCAGAGAAGAGCCCCTTTCAACGGACTTATGCAACTCAGATAAAAAGATGCGGAGAGATGGCTCGTAAACTGCGTTTTTTCAAGGAGCAAATGTTGAAGGCAGGTGTTTCACCAAAACATTCCTCAACACAAGCTGATGTGAACATCGATGACCTTGAGGTAAAACTTACAGAAATTGAGTCAGAGTTAGCTGAGATGAATGCAAATGGTGAAAAATTGCAACGCTCATACAATGAACTTGTGGAGTATAAGCTTGTTCTGCAGAAGGCTGGTGAGTTTTTCCACTCAGCTCAAAGCCGTGCCCTAGAACAGCAGAGAGAGTATGAATCACGCCATCTGAGTGGTGAATCTATGGAAACACCTTTATTACAGGACCAAGAATTGCTAAGTGATTCATCAAAGCCAGTTAATTTGGGGTTTTTAGCTGGTCTTGTTCCCAAGGGAAAGTCCATGACATTTGAGAGAATTTTATTTCGTGCTACTAGAGGCAATGTGTTTTTGAGGCAGGCTGCTATTGAGGATCCTGTCACAGATCCTGTTTCTGGAGAAAAGACTGAGAAAAATATGTTTGTGGTTTTCTATGCTGGCGAAAAAGTAAAAGCAAAGATTCTGAAAATCTGTGAAGCCTTTGGTGCTAATCGATACCCTTTTACTGAGGAACTTGGAAAACAAGCTCAAATGATTTCAGAGGTTTCTGGAAAACTTCTAGAATTGAAGTCCACCATAGATGCTGGACTCCTGCACCAGGTTCACTTGCTAGATACCATTGGGTCTCAGTTCGAGCAATGGAATCTTTTGGTGAGGAAGGAGAAATCTATTCACCATACTCTGAACATGCTAAGCCTCGATGTGACGAAAAAATGTCTCGTTGCTGAGGGGTGGAGTCCTGTTTTTGCAACAAAGCAGATCCAGAATGCATTACAGCGGGCAGCAGTCGACTCTAATTCTCAAGTCAGTGCCATTTTCCAAGTTTTGCATACTAGGGAGATGCCACCTACCTATTTTCGCACAAACAAATTTACTTCTTCGTATCAAGGAATTATTGACTCATATGGGGTTGCTAAGTATCGGGAGGCAAATCCTACTGTGTATACCGTAGTTACCTTTCCATTTCTTTTTGCTGTGATGTTTGGTGATTGGGGGCATGGAATATGTTTACTACTGGCAGCTCTATATTTCATAATCAGGGAGAAGAAACTTTCTAGCCAGAAGCTTGATGACATCACAGAGATGACTTTTGGAGGTCGTTATGTTATTCTGTTGATGGCACTCTTCTCAATCTACACTGGTGTGATCTATAATGAGTTCTTTTCTGTTCCATTTGAACTCTTCGGTCCCTCTGCATATGAATGCCGTGACCTTTCTTGCAGTGAAGCTACAACAGTGGGCCTAATAAAAGTGCGTCGCACTTACCCTTTTGGAGTGGATCCGGTATGGCATGGTACACGAAGTGAATTGCCATTCCTGAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTGGGAATTATAATGAGCTATTGCAATGCCAAATTCTTTAGGAACAACGTAAATGTATGGTTCCAATTTATTCCCCAGCTGATATTTCTCAACAGTCTATTTGGCTACCTATCCCTTCTTATTGTTGTGAAGTGGTGTACTGGTTCTCAAGCTGATTTGTACCATACAATGATCTACATGTTCCTGAGCCCAACAGATGAGTTGGGTGAGAACCAACTCTTTGTTGGTCAGAAAAATCTGCAGCTTGTGCTTTTGCTTCTGGCTGTTGTCGCTGTGCCCTGGATGCTGTTGCCAAAACCTTTTATTTTGAAGAAGCAACATGAAGCTAGGCACGGGGATGAATCCTATGCACCACTTCAAAACACAGATGAGAGCTTGCAAGTGGAGTCAAATCATGATTCCCACGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTACATCAACTCATACACACAATCGAATTTGTACTTGGAGCAATATCTAATACTGCTTCTTACCTTCGTCTGTGGGCCCTTAGTCTTGCTCACTCAGAGTTGTCAAGTGTATTCTACGAGAAGGTTCTGATGATGGCATGGGGGTACAATAATGTGATTATCCTGATAGTGGGTTTCATTGTCTTCGTTTTTGCTACCGTTGGAGTGCTACTTGTCATGGAAACTCTGAGTGCCTTCTTGCATGCGTTACGTCTTCACTGGGTGGAGTTCCAAAACAAGTTTTATGAAGGCGATGGTTACTTGTTCGACCCTTTCTCGTTCTCGTTGCTAGACGAAGAGGATGACCTGCCTTAA 2469 0.4285 MGEVEGHGGCCPPMDLFRSEPMHLVQLIIPIESAHRTVSYLGDLGLLQFKDLNSEKSPFQRTYATQIKRCGEMARKLRFFKEQMLKAGVSPKHSSTQADVNIDDLEVKLTEIESELAEMNANGEKLQRSYNELVEYKLVLQKAGEFFHSAQSRALEQQREYESRHLSGESMETPLLQDQELLSDSSKPVNLGFLAGLVPKGKSMTFERILFRATRGNVFLRQAAIEDPVTDPVSGEKTEKNMFVVFYAGEKVKAKILKICEAFGANRYPFTEELGKQAQMISEVSGKLLELKSTIDAGLLHQVHLLDTIGSQFEQWNLLVRKEKSIHHTLNMLSLDVTKKCLVAEGWSPVFATKQIQNALQRAAVDSNSQVSAIFQVLHTREMPPTYFRTNKFTSSYQGIIDSYGVAKYREANPTVYTVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQKLDDITEMTFGGRYVILLMALFSIYTGVIYNEFFSVPFELFGPSAYECRDLSCSEATTVGLIKVRRTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIIMSYCNAKFFRNNVNVWFQFIPQLIFLNSLFGYLSLLIVVKWCTGSQADLYHTMIYMFLSPTDELGENQLFVGQKNLQLVLLLLAVVAVPWMLLPKPFILKKQHEARHGDESYAPLQNTDESLQVESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAISNTASYLRLWALSLAHSELSSVFYEKVLMMAWGYNNVIILIVGFIVFVFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYLFDPFSFSLLDEEDDLP* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00512 822 Coils Coil 95 129 - -
Rops3g00512 822 PIRSF ATP6V0A1 12 821 IPR026028 GO:0000220|GO:0046961
Rops3g00512 822 Pfam V-type ATPase 116kDa subunit family 40 812 IPR002490 GO:0033179|GO:0046961|GO:1902600
Rops3g00512 822 PANTHER VACUOLAR PROTON ATPASES 16 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00512 Rops-Chr3 6517313 6527616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00512 14 820 Primary Pumps ATPases(2) AT4G39080 77.379 0.0 1300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00512 K02154 - gmx:100810062 1438.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00512 3 6517313 6527616 Rops3g00512 3 6517313 6527616 ECH