Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00511 ATGGCCCACAAATTCTGGCGGGAAATTCATGACCATTTCCCCGCCATATGTTGCAGCTATTCATGTTCACTCTCTCTGCTTCTGTGTGATTTTCTCTCGGCACATTCACTTGGCACTAACAAAGTCATGGCTTCCGATTCTACTCCCACGAATTTCAACAACGGCCCTTCATCTCCCGACGATTCACTTTCCAGCCCTATCGCCAACACCTTCTCCTCTCCCGGCCGGAGACGCCGCCAATCTTCCACGCCGTCAGCATTCGGAACACCGCCACCTCACCGGTCCCGATTTGCCTCCTCCGATGCCACGCCAACTCCGTCTCGCCTCAGGCGAAGAGGCAGCGCCGGCGCCGGAGGACGCTTTCCATCCACGCCGACCTCCTTTTCCGACGATATTCCCATCTCGTCGGAAGGCGGCGACTATGACATGGACGGAACCGGACTCACCTATGTCTGGGGCACTGATATAAGAGTGGAAGATGTGAACGATGCGATTCAGAGGTTTTTGAGGAACTTTCGAGAAGCTTCTACGTCTCAGGGTGGTGTTAATGATGGGTTGGATTTGCATACTGAAGGGAAGTATGAGAAATTAATCAAACAGGTTATTGAAATCGAAGGGGATTCTTTGGACGTTGATGCGCGTGATGTGTTTGATCATGATCGTGAATTGTACAAGCAGATGGTTAGGTACCCTCTCGAGGTGCTTGCAATTTTCGACTTGGTTTTGATGAACATGGTTAGCAGAATTAAACCCATGTTCGAGAAGCACATTCAGACTCGGATTTTCAATCTCAAAACCTCAACCTCAATGAGGAATTTGAACCCCTCTGATATTGAGAGGATGGTATCATTGAAGGGTATGGTTATACGATGCAGCTCAATTATACCGGAAATTAGAGAAGCTATATTTAGGTGTCTTGTGTGTGGATTCTGCACTGACCCTGTTGTTGTGGAGAGAGGGCGAATAATTGAACCTACTCAATGCTTGAGGGAAGAGTGTCAGTCCAAGAACTCGATGACACTGGTTCACAACAGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTCCAGGAGACACCTGACGAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGATGCATGACAAGCTGGTAGATGCTGGAAAGCCAGGTGACAGAGTTGAGGTGACTGGTATTTATAGAGCTATGAGTGTCAGGGTTGGACCAACTCAGAGAACCGTTAAGTCATTGTTCAAGACGTATATTGATTGTCTTCACATAAAGAAGTCTGATAAGTCCAGGTTGCTGATAGAGGACGGTATGGAGGTTGATAACGGCCCGGGAAGAAACACAGAAGAAGTTCTCTTTGACGAAGAAAAGGTGGCTCAACTGAAGGAGCTCTCAAAACAGCCAGATATATATGAAAGACTGACAAAGTCATTGGCGCCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGAGGCAATGCTCTGAAGTTGGCATCTGGTGCTAGCTTCCGTGGTGATATAAATATTCTTCTTGTTGGTGATCCTGGGACAAGCAAGTCCCAACTACTTCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGTGGAAGGGGGAGCTCTGCTGTCGGATTGACTGCTTATGTGGCCAAAGACCCTGAAACAGGCGAAACAGTTCTTGAGAGTGGTGCCCTAGTTTTGAGTGACCGAGGTATCTGCTGTATAGATGAATTCGACAAAATGTCTGACAATGCAAGGAGCATGTTACACGAGGTGATGGAACAACAAACCGTTTCAATTGCAAAGGCAGGCATTATTGCTTCTCTCAACGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGGTCACGATATAATCCCCGCTTGTCTGTCATTGATAACATACACCTTCCCCCCACTCTTCTGTCCAGGTTTGATTTAATTTACTTAATTCTTGACAAGGCTGATGAACAGACTGACAGGCGACTTGCCAAACATATTGTTTCCCTACACTTTGAGAATCCTGAGAGCATGGAGCAGGATGTGTTGGACCTTTATACACTAACCGATTATATTAGCTATGCCCGAAAGCACATACACCCACAGCTGTCTGATGAAGCTGCGGAAGAATTGACTAGAGGTTACGTGGAAATAAGAAAAAGAGGAAATTTTCCAGGGAGTAGCAAAAAGGTGATAACAGCGACACCGAGGCAGATTGAGAGTCTGATACGCCTTAGTGAAGCATTGGCTCGGATTCGCTTCTCAGAATGGGTCGAAAAGCGTGATGTAATGGAGGCATTTCGGCTTCTGGAAGTTGCGATGCAGCAGTCTGCAACGGATCACTCTACTGGAACCATTGACATGGATCTTATTACCACTGGAGTTTCGGCAAGTGAAAGGATGAGACGAGAAAGTCTGCTACAAGCAACCCGCAACATAATCATGGAGAAGATGCAAATTGGGGGACCATCCTTGCGGTTATTGGAGTTATTGGAAGAATTGAAGAAACAAAGCACTGGCAGTGAAATTCATCTTACTGATCTAAGGAATGCAGTTACTACTCTCGCCAGCGAAGGATTTGTTACCATGCATGGTGACAGCGTAAAGAGATCATGA 2640 0.4648 MAHKFWREIHDHFPAICCSYSCSLSLLLCDFLSAHSLGTNKVMASDSTPTNFNNGPSSPDDSLSSPIANTFSSPGRRRRQSSTPSAFGTPPPHRSRFASSDATPTPSRLRRRGSAGAGGRFPSTPTSFSDDIPISSEGGDYDMDGTGLTYVWGTDIRVEDVNDAIQRFLRNFREASTSQGGVNDGLDLHTEGKYEKLIKQVIEIEGDSLDVDARDVFDHDRELYKQMVRYPLEVLAIFDLVLMNMVSRIKPMFEKHIQTRIFNLKTSTSMRNLNPSDIERMVSLKGMVIRCSSIIPEIREAIFRCLVCGFCTDPVVVERGRIIEPTQCLREECQSKNSMTLVHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLMHDKLVDAGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKSDKSRLLIEDGMEVDNGPGRNTEEVLFDEEKVAQLKELSKQPDIYERLTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFENPESMEQDVLDLYTLTDYISYARKHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKRDVMEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERMRRESLLQATRNIIMEKMQIGGPSLRLLELLEELKKQSTGSEIHLTDLRNAVTTLASEGFVTMHGDSVKRS* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00511 879 Gene3D - 297 349 - -
Rops3g00511 879 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 162 834 IPR031327 GO:0003677|GO:0005524|GO:0032508
Rops3g00511 879 Pfam MCM OB domain 270 399 IPR033762 -
Rops3g00511 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 480 795 IPR027417 -
Rops3g00511 879 FunFam DNA helicase 450 788 - -
Rops3g00511 879 MobiDBLite consensus disorder prediction 48 140 - -
Rops3g00511 879 Gene3D - 788 876 IPR036388 -
Rops3g00511 879 Gene3D - 453 787 IPR027417 -
Rops3g00511 879 Pfam MCM P-loop domain 457 679 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops3g00511 879 Pfam MCM AAA-lid domain 695 781 IPR041562 -
Rops3g00511 879 Pfam MCM N-terminal domain 164 266 IPR027925 -
Rops3g00511 879 SMART mcm 266 783 IPR031327 GO:0003677|GO:0005524|GO:0032508
Rops3g00511 879 SUPERFAMILY Nucleic acid-binding proteins 187 420 IPR012340 -
Rops3g00511 879 CDD MCM4 472 781 - -
Rops3g00511 879 Gene3D - 155 264 - -
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein family signature 622 634 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein family signature 649 657 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein family signature 598 611 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein family signature 510 525 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein family signature 570 584 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 485 496 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 343 355 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 783 792 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 631 648 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops3g00511 879 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 292 305 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Rops3g00511 879 SMART AAA_5 511 661 IPR003593 GO:0016887
Rops3g00511 879 Gene3D - 270 409 IPR012340 -
Rops3g00511 879 ProSitePatterns MCM family signature. 578 586 IPR018525 GO:0003677|GO:0005524|GO:0006260
Rops3g00511 879 ProSiteProfiles MCM family domain profile. 469 675 IPR001208 GO:0003677|GO:0005524|GO:0032508
Rops3g00511 879 FunFam DNA helicase 297 349 - -
Rops3g00511 879 MobiDBLite consensus disorder prediction 48 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00511 Rops-Chr3 6508952 6514474 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00511 43 878 Core DNA Replication Machinery Family AT2G16440 73.826 0.0 1255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00511 K02212 - gmx:100805788 1425.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00511 3 6508952 6514474 Rops3g00511 3 6508952 6514474 ECH