Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00506 ATGAAGATCCAGTGTGATGTGTGTCACAAAGAGGAAGCCTCATTATTCTGCCCTGCAGATGAAGCAGCTTTATGCCATGGCTGTGATCTTATTATTCACCATGTCAACAACCTTGCAGGCAAACACAAACGCTTCTCTTTGCACTACCCCACTTCAAAAGACTCTCCTCTCTGTGATATCTGCCGTGAGAAGCGTGCATATCTATTTTGCCAAGAAGACAGAGCAATACTATGCAGAGAATGTGACCTTCATGTCCATAGAGTCAATGAACATACCCAGAAACACAACAGGTTTCTTCTCACTGGAATAAAACTTGGTGCTGCTTCTTCAGACCCAACATCATTATTATCCTCCAATTGCACTGCCACTGACAAAGCCACTGGCTCTGAAGTAGGAACTTCTAGTTCATTTTCAAATGAAAATACAAGTTCTTCTCGTTTTGTTGAAGAGAATAATATGGCTTGTGACACGGGTTCAGTTTCAAAGAGTAGCATTTCTGAATATTTGATTGAGACAATTCCCGGTTATTGCATGGAAGACCTTCTTGATGCTTCTTTTGCTGCACCTAATAATGGGTTTTGTAAGGATTATGAGCACTTTGAGAACCAAGATGTTCAAATCAGCAGCATGTGTTCGTTTCCACTGCAAGTGCCAGTTAGATCCTCAAACCTTCGCACTTCGAATCTTCCCCTTATTGATTCTTTGGTTGGGGGGGTTATGGAAATGCCACAAACGAAAACTGCTGAAGGGTACTCGAATTGGAGATATAATGGCTATGCTAACTACAAAGTTCGTTCCTTCCATTGA 807 0.4164 MKIQCDVCHKEEASLFCPADEAALCHGCDLIIHHVNNLAGKHKRFSLHYPTSKDSPLCDICREKRAYLFCQEDRAILCRECDLHVHRVNEHTQKHNRFLLTGIKLGAASSDPTSLLSSNCTATDKATGSEVGTSSSFSNENTSSSRFVEENNMACDTGSVSKSSISEYLIETIPGYCMEDLLDASFAAPNNGFCKDYEHFENQDVQISSMCSFPLQVPVRSSNLRTSNLPLIDSLVGGVMEMPQTKTAEGYSNWRYNGYANYKVRSFH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00506 268 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 207 - -
Rops3g00506 268 FunFam B-box zinc finger protein 21 1 98 - -
Rops3g00506 268 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Rops3g00506 268 CDD Bbox1_BBX-like 5 47 - -
Rops3g00506 268 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Rops3g00506 268 CDD Bbox1_BBX-like 57 100 - -
Rops3g00506 268 Pfam B-box zinc finger 55 92 IPR000315 GO:0008270
Rops3g00506 268 SMART bboxneu5 4 47 IPR000315 GO:0008270
Rops3g00506 268 SMART bboxneu5 53 100 IPR000315 GO:0008270
Rops3g00506 268 Gene3D Classic Zinc Finger 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00506 Rops-Chr3 6460016 6460255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00506 1 195 C2C2-CO-like Transcription Factor Family AT1G75540 50.481 1.27e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops3g00506 zf-B_box 1.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00506 - - gmx:100790232 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00506 3 6460016 6460255 Rops3g00506 3 6460016 6460255 ECH