Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00492 ATGGAAGTTGTGGTGGCGAAAGCGTTGAAACCAAGCTTGAGGACAGAGTTTATCTTCCCACAGGATGAGATTTTGTGTTTGAACGCAAACAACGTTGTTGTCGGTGAAGATTTCTCAGTTGATGACCTCCTTGACTTTTCCAACGGCGAATTCCAACATGGTTCCGTATCAAAAGAAACTGAAAACTGTGAAGAAGAGGAAGATGAAGAAAAAGACAGCACCTCAGGTTCCTCAAACCGAACAGAAGATGATAGCAACTCCAATTCCGGTTTTTCTAGCGCCGGCGATTCTGACTCCATTTTTGCCGGTGAATTAGCCGTTCCGGCTGATGATGTGGCGGACCTGGAGTGGGTGTCTCACTTTGTCGATGATTCTCTCCCGGAGCTCTCTCTATTGTACCCGGCCCGGCCCGTACCGGAAGCTAGACCGGGCTTAAACAAAACTCCTTCTCATCCCTCTGCAATCCCAAGTAAGCCCAGAACCACCAAGACTAGAAAACCCATCAATCATGTGTGGTCCTTTAATTCACCTTTAGTGTTCACCGGCTCCGTCATCAGCGAGCCGCCGGTGAAGAAACAAAAGAAAAAGCCCGAGGCCCAAACTGGTGGGCCCCAGTTTCAACGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCACAGTGGAGGGCCGGCCCACTGGGCCCAAAAACCCTTTGCAACGCTTGTGGAGTCCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCGGCCTCAAGCCCAACCTTCTCAAGCGCTATTCACTCTAACAGCCATCGTAAAGTGGTGGAGATAAGGAGAAGGAAGGAAATGACTGAACCGGAAACCGGTCTGAACCGGACTCAAATGGTCCCAGATTGCTGA 882 0.5068 MEVVVAKALKPSLRTEFIFPQDEILCLNANNVVVGEDFSVDDLLDFSNGEFQHGSVSKETENCEEEEDEEKDSTSGSSNRTEDDSNSNSGFSSAGDSDSIFAGELAVPADDVADLEWVSHFVDDSLPELSLLYPARPVPEARPGLNKTPSHPSAIPSKPRTTKTRKPINHVWSFNSPLVFTGSVISEPPVKKQKKKPEAQTGGPQFQRRCSHCQVQKTPQWRAGPLGPKTLCNACGVRFKSGRLFPEYRPASSPTFSSAIHSNSHRKVVEIRRRKEMTEPETGLNRTQMVPDC* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00492 293 MobiDBLite consensus disorder prediction 150 164 - -
Rops3g00492 293 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 267 - -
Rops3g00492 293 ProSitePatterns GATA-type zinc finger domain. 210 235 IPR000679 GO:0006355|GO:0043565
Rops3g00492 293 MobiDBLite consensus disorder prediction 142 164 - -
Rops3g00492 293 PIRSF Txn_fac_GATA_plant 8 291 IPR016679 GO:0003677|GO:0005634|GO:0045893
Rops3g00492 293 FunFam GATA transcription factor 200 286 - -
Rops3g00492 293 MobiDBLite consensus disorder prediction 51 95 - -
Rops3g00492 293 CDD ZnF_GATA 209 266 IPR000679 GO:0006355|GO:0043565
Rops3g00492 293 ProSiteProfiles GATA-type zinc finger domain profile. 204 240 IPR000679 GO:0006355|GO:0043565
Rops3g00492 293 MobiDBLite consensus disorder prediction 79 95 - -
Rops3g00492 293 Pfam GATA zinc finger 210 243 IPR000679 GO:0006355|GO:0043565
Rops3g00492 293 PANTHER GATA TRANSCRIPTION FACTOR 27 284 - -
Rops3g00492 293 SMART GATA_3 204 254 IPR000679 GO:0006355|GO:0043565
Rops3g00492 293 Gene3D - 205 255 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00492 Rops-Chr3 6314859 6316274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00492 37 275 C2C2-Gata Transcription Factor Family AT4G36240 44.309 6.30e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Rops3g00492 GATA 1.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00492 - - gmx:100776188 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00492 3 6314859 6316274 Rops3g00492 3 6314859 6316274 ECH
Rops10g02634 10 45660945 45666166 Rops3g00492 3 6314859 6316274 ECH