Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00475 ATGGGTGATAGTGAAGATGCTAATAATGAAATGATGCAAAGGCTTCACTCTAGTTCGTTTATGAAACAAGGTATGAACATGGAGCAGTTGAACATACCTCAATTGAACCCTTCACAAATGCGTTCAAGGCATCATTTTCAACAGAGTTTGGGTTTAGAAGGGAACAAAAGAGCAGGGATACCACCTTCACACCCTCATCATCAGATCCCACCGATTTCACCATATTCTCAGATCCCAGTTTCAAGGCCTCAAATGGGTTCACAGAATCTTAGCCCAGGACCTACACATTCACGATCATTATCACAACCTTCATTCTTTTCCCTTGATTCTCTTCCCCCTTTAAGCCCTTCTCCATTTCGTGACTCGTCTTCAACTTCCATGTCAGACCATGCTTCTGCTGACGTGTCAATGGAAGATCGTGATGTGAGTTCTCACTCTTTGTTGCCACCATCACCTTTCCCTAGAGTTGGCAACAACAACAACACCAACACCAACAACAATAACAACAACAACCCTTGTAGTTTGCCCCCTAGAAAAGCTCATAGGCGTTCTAACAGTGATATCCCATTTGGGTTTTCGACTGTTTTACAATCTTCACCGCCACTTATTCCTCTTAGGGGTTCAGTGTCTGGAAGAGAAGTAGCAAAACCTGGTGGGTTGGTGAAAAAGGAAACAGCTTGGGAAAGAAGTGTCGTTGATCACAATGTAGAGGGTTCTGGGGAGAAGAAATCTCCGGAAGGTGAAGTTGTGGATGATCTTTTTTCTGCTTACATGAATTTGGATAACATTGATGCATTGAACTCTTCAGGGACTGATGACAAAAACGGTGCTGAAAATCGTGATGATTTGGATAGTAGAGCTAGTGGGACCAAGACTAATGGTGGTGACAGTAGTGATAATGAAGCAGAAAGCAGTGTTAATGAGAGTGGAGATGGTAGGCAGAGGCAAGGAATGAAGAGGGAAGGGGTGAAGAGGAGTGCAGGAGGTGATATTGCACCAACCACAAGGCACTATAGGAGTGTGTCAATGGATAGTTTCATTGGAAAGTTGAACTTCAATGATGAATCCACTAAGCTTCCTCCTTCACCTGGTTTGATTTCACCTGGCAATTCAATTGATGGAAATTCGGCAGCTTTTAGTTTGGAATTTGGAAATGGTGAATTCAGTGGACCTGAATTGAAGAAAATTATGGCTAATGAAAAACTTGCTGAGATTGCTTTGACAGATCCAAAGCGTGCAAAAAGGATTTTGGCTAATCGGCAATCAGCTGCACGATCTAAAGAAAGGAAGATGCGTTACATTTCAGAACTAGAACACAAGGTTCAGACTCTACAGACAGAAGCCACAACACTATCAGCACAGCTTACTCTGTTACAGAGAGATTCTGTTGGACTCACTAACCAGAATAGTGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAGGCAAAGCTCCGAGATGCTCTCAATGAGGCGCTTACTGCTGAAGTTCAAAGACTGAAGCTTGCTACGGCTGAGCTGAATGGGGAGTCACACACTTCTAGCTGCTTGATTCCACAACATTCTGTCAACCCTCTAATGTTCCAGCAGCAGCAGCCTCTTACTACATCTCAACAAAACATTCATCTTCAACAACAGCATCAGCATCAGCATCAGCATCAACAACAGCAGCAGAATGGTAATTCCAACTCAAAGACCGACCTAAAACAATAG 1713 0.432 MGDSEDANNEMMQRLHSSSFMKQGMNMEQLNIPQLNPSQMRSRHHFQQSLGLEGNKRAGIPPSHPHHQIPPISPYSQIPVSRPQMGSQNLSPGPTHSRSLSQPSFFSLDSLPPLSPSPFRDSSSTSMSDHASADVSMEDRDVSSHSLLPPSPFPRVGNNNNTNTNNNNNNNPCSLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRGSVSGREVAKPGGLVKKETAWERSVVDHNVEGSGEKKSPEGEVVDDLFSAYMNLDNIDALNSSGTDDKNGAENRDDLDSRASGTKTNGGDSSDNEAESSVNESGDGRQRQGMKREGVKRSAGGDIAPTTRHYRSVSMDSFIGKLNFNDESTKLPPSPGLISPGNSIDGNSAAFSLEFGNGEFSGPELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKLATAELNGESHTSSCLIPQHSVNPLMFQQQQPLTTSQQNIHLQQQHQHQHQHQQQQQNGNSNSKTDLKQ* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00475 570 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 409 472 IPR004827 GO:0003700|GO:0006355
Rops3g00475 570 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 118 565 - -
Rops3g00475 570 MobiDBLite consensus disorder prediction 1 22 - -
Rops3g00475 570 CDD bZIP_plant_RF2 412 461 IPR044759 GO:0003700|GO:0006355
Rops3g00475 570 SMART brlzneu 407 471 IPR004827 GO:0003700|GO:0006355
Rops3g00475 570 Pfam bZIP transcription factor 411 465 IPR004827 GO:0003700|GO:0006355
Rops3g00475 570 Coils Coil 490 510 - -
Rops3g00475 570 MobiDBLite consensus disorder prediction 266 337 - -
Rops3g00475 570 MobiDBLite consensus disorder prediction 74 132 - -
Rops3g00475 570 MobiDBLite consensus disorder prediction 53 192 - -
Rops3g00475 570 MobiDBLite consensus disorder prediction 153 175 - -
Rops3g00475 570 MobiDBLite consensus disorder prediction 288 312 - -
Rops3g00475 570 FunFam probable transcription factor PosF21 410 463 - -
Rops3g00475 570 MobiDBLite consensus disorder prediction 532 570 - -
Rops3g00475 570 SUPERFAMILY Leucine zipper domain 411 462 IPR046347 GO:0003700|GO:0006355
Rops3g00475 570 Coils Coil 427 461 - -
Rops3g00475 570 Gene3D - 410 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00475 Rops-Chr3 6044719 6050618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00475 1 530 bZIP Transcription Factor Family AT4G38900 60.612 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops3g00475 bZIP_1 7e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00475 - - gmx:780560 709.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g00475 3 6044719 6050618 Rops3g00475 3 6044719 6050618 ECH