Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00474 ATGGCTGCGGCACCTCCAAATCTCTCCACTCCCTCCTCCACCTCCCTTTCCAAACCCTCCCCTCTCCCTCTTCCCGTCAATACTTCCATCTTCAACAAAACCCTTCCAAAACCCACCCTTTATCGCTCCCTCTGCAAACCCCGAAAAACCTCTTTCATTGTTTCATCGAAAAACCCAATTTCTGACTTTGTTTCCCCAAACAGGGAATACCCAGAAGGGTTTCACGATGATGAGAAGCCCCGAGAAGAGTGTGGCGTTGTGGGCATATACGGTGACCCTGAAGCTTCTCGTCTTTGTTACTTGGCCCTCCACGCGCTTCAGCACCGTGGCCAAGAAGGTGCTGGAATCGTCACCGTAAACAATAACGTGCTTCAATCTATAACCGGTGTTGGGCTTGTTTCTGATGTGTTCAACCAGTCAAAGCTTGACCAGTTACCTGGGAATTTGGCTATTGGGCATGTTCGTTACTCAACTGCAGGACAATCTATGCTAAAAAACGTTCAACCTTTCGTTGCTGGGTATCGTTTTGGTTCTGTTGGGGTTGCTCATAATGGCAATTTGGTTAATTATGGCACCTTAAGGGCAAAACTTGAAGAGAATGGATCCATTTTCAACACCACTTCTGACACTGAGGTTGTGCTTCATTTGATTGCAACCTCAAAGCATAGACCTTTTATATTGAGGATTGTTGATGCTTGCGAGCAGATTGAAGGGGCTTATTCTATTGTGTTTGTGACTGAGGATAAGCTTGTTGCGGTAAGGGATCCATTTGGGTTTAGACCTTTGGTTATGGGTAGGAGAAGTAATGGTGCTGTTGTTTTTGCTTCTGAGACTTGTGCACTTGATTTGATTGAAGCCACATATGAGAGAGAGGTTTACCCTGGTGAGGTTTTGGTGGTGGATAAAAATGGGGTTCAATCTCTTTGCCTCATGTCTCATCCACAGCCAAAGCAATGTATCTTTGAGCATATATACTTTGCATTGCCCAATTCAGTGGTTTTTGGGAGGTCTGTCTATGAATCTAGGAGGCAATTTGGGGAAATATTGGCCACTGAGAACCCTGTGGATTGTGATGTTGTGATAGCAGTTCCAGATTCTGGTGTTGTGGCAGCACTTGGTTATGCTGCCAAAGCTGGTGTTCCTTTTCAGCAGGGGCTGATTAGGTCACACTATGTGGGGAGGACTTTCATTGAGCCATCTCAGAAGATTAGGGACTTTGGTGTGAAGTTGAAGCTCTCACCTGTACGTGCTGTACTTGAAGGTAAGAGGGTTGTGGTTGTGGATGACTCAATTGTGAGGGGAACCACATCATCCAAAATAGTAAGGCTGCTAAAGGAGGCTGGTGCCAAGGAAGTTCACATGAGGATTGCAAGCCCACCAATTATTGGTTCTTGTTATTATGGGGTGGATACACCTAGCTCTGAGGAGTTGATTTCCAATAGGATGAATGTGGAGGAAATAAGGGAGTTTATTGGATCAGACTCACTTGCTTTTCTGCCATTTGATAGCTTGAAGAAGTTGTTAGGCAATGACTCTCCTAATTTCTGCTATGCTTGTTTCTCAGGGAAATACCCTGTTGAGCCTAGAGAACTCAAAGTGAAGAGGGTTGGTGACTTTGTGGATGATGGCTTAAATGGGAGTTGGGAATCTATTGATGGGGGTTGGGTTCAAGCAAACCGAAATCAGAAAGAGGTGAAGGCTGCTACTAGTCTCTGA 1716 0.4528 MAAAPPNLSTPSSTSLSKPSPLPLPVNTSIFNKTLPKPTLYRSLCKPRKTSFIVSSKNPISDFVSPNREYPEGFHDDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVTVNNNVLQSITGVGLVSDVFNQSKLDQLPGNLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNLVNYGTLRAKLEENGSIFNTTSDTEVVLHLIATSKHRPFILRIVDACEQIEGAYSIVFVTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVYPGEVLVVDKNGVQSLCLMSHPQPKQCIFEHIYFALPNSVVFGRSVYESRRQFGEILATENPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMNVEEIREFIGSDSLAFLPFDSLKKLLGNDSPNFCYACFSGKYPVEPRELKVKRVGDFVDDGLNGSWESIDGGWVQANRNQKEVKAATSL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00474 571 CDD PRTases_typeI 346 457 IPR000836 -
Rops3g00474 571 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 84 525 IPR029055 -
Rops3g00474 571 Pfam Phosphoribosyl transferase domain 358 453 IPR000836 -
Rops3g00474 571 CDD GPATase_N 84 334 IPR035584 -
Rops3g00474 571 Gene3D - 343 507 IPR029057 -
Rops3g00474 571 MobiDBLite consensus disorder prediction 1 21 - -
Rops3g00474 571 Hamap Amidophosphoribosyltransferase [purF]. 83 524 IPR005854 GO:0004044|GO:0009113
Rops3g00474 571 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 84 303 IPR017932 -
Rops3g00474 571 Pfam Glutamine amidotransferase domain 162 281 IPR017932 -
Rops3g00474 571 NCBIfam amidophosphoribosyltransferase 84 525 IPR005854 GO:0004044|GO:0009113
Rops3g00474 571 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 84 307 IPR029055 -
Rops3g00474 571 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 82 531 - -
Rops3g00474 571 SUPERFAMILY PRTase-like 319 530 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00474 Rops-Chr3 6026809 6028863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00474 67 557 PRT Gene Family AT2G16570 85.081 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00474 K00764 - gmx:100791919 971.459