Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00451 ATGACAGTTGAGAGAAGGTTTGTTTTGGTGGGGATTAGAATTGATGGCCATAGCAGACACCTTCTCAACTGGGCTCTTGTCAAAGTTGCTGAACCTGGGGATTGTGTTATTGCAGTCCATGTAGTTAAAAGTTCAGCTTGTGTTTCCAAAAACAAGAGCCTGATAGATGGTTATTTAGAGGTATATGAAGGTCTATGTGGTGTGAAGAAGGTTGGTCTCACTGGTCTAATCTTCACAGGAAGCTCCATCCGAGACATTCTGATTAGAGAAGCAAAAACCCGTGCTGCTCTGGCTCTAGTGGTAGGGGGTCGAGCTGCCACAGCTAAATATTGCGCCAAAAGACTGCCACCTACTACCAATGTTCTAGCCATCAAAGATTCAAGAATTGTCTTCAGGAGGTGCACCAACAAACAACTACCAGGTGGTCTTATACTGGATCCAAGACCAAGTTTCACAAGCATAGAAAGCCTGAGTGAGAGAGTAATCCAGTCTGAATTATGTGACTCCGTGGAGGAGAGAAAGAAATCAACACACCAAAATACCAGGGAATTAAAGGAAGAAGCATTTGACGGATCAAAAAGGTGCAAGTTAAGGTCAATATCCATGCCTGCAAGTGATCCTGCTGAGAGGAAGCTTGGTTGGCCTCTACTCCGCAGAGCCAATTCAGGAATCTCACAAACTTGTCATGCAAGGGACATGTCAGTAGTACAATGGGTAATGAGCTTACCAGATCGTTCACCACATAAAAGTCCTCACTCTTCTTCAATTGAGGAAAACCCATTTGAAAGGGGCATCAGTGACATTGAGGATGAGAGCTCTAAAAATTCTTCACCTCTATCTGTTGAGTTACCAAAGGGCCTAGAGGGGATGATAAATGTAAATTCACTTGATTGCAAGTGGTTCAACCTTGAGGTTCTGAAGTCTTGCACTAACCAATTCTCTTCAGAAAACTTGATTGGGAAAGGAGGTAGCAATCGTGTGTACAAAGGAGTTCTTCCTGATGGAAAACCAATGGCAGTTAAAGTATTGCAGTCATCAAAAGAATCTTGGAAAGATTTTGCCCTTGAGGTGGAAATAATATCCTCATTGAAGCACAAAGGCATTACCCCACTACTTGGGATTTGCATTGAGGACAATGCTCTAATATCTGTTTATGATTATTTCCCCAAAGGTAGCTTAGAGAAAAATTTAAAAGGAAAGAACAAGGATGGATCCATCTTGTCATGGGAAGTGAGATTTAATATAGCTGTTAGGATCGCTGAAGCGCTGGATTACCTACATAGGGAGGCTTTGAAGCCTGTTATACATAGAGATGTCAAGTCTTCAAACATTCTTCTTTCCCATGAGTTTGAACCACAATTGTCTGATTTTGGACTTGCAATATGGGGGCCAACAACTTCATCCTTTTTGACACACGAAGATGTAGTTGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGATGTCTATGCCTTTGGTGTTGTGCTACTTGAACTAATATCAGGAAGGGAACCTATCAGCTATGAACCTTGCAAAGGGCAAGAGAGCTTGGTCGTGTGGGCAAAACCAATAATAGAGAGTGGGAATATTAAAGGCCTATTGGACCCAAATTTAGAAGGGAAGGTTGATGAGGCCCAATTACAAAGAATGGTTTTAGCAGCATCTTTATGCATCACAAGGGCTGCTAGGCTTCGTCCTAAACTGAATCAGATACTGAAGATCCTAAAAGGAGACGAGGAAGTTGAATATTTCTTAAACTCCCACGGGAATGATCATGAGCATGAAGAAAATCAAGAAAACATTGATGATGAAGTCTATCCAAATTCAAGTGCAGAGTTACACTTGAGTCTTGCATTGCTTGGTATTGACAATGACACTACATCATATAGTAGTACAGACCACAGTTCTAATGAACAATTGCAAGAACAATGGAGCAGGTCTTCAAGTTTTAATTAG 1983 0.414 MTVERRFVLVGIRIDGHSRHLLNWALVKVAEPGDCVIAVHVVKSSACVSKNKSLIDGYLEVYEGLCGVKKVGLTGLIFTGSSIRDILIREAKTRAALALVVGGRAATAKYCAKRLPPTTNVLAIKDSRIVFRRCTNKQLPGGLILDPRPSFTSIESLSERVIQSELCDSVEERKKSTHQNTRELKEEAFDGSKRCKLRSISMPASDPAERKLGWPLLRRANSGISQTCHARDMSVVQWVMSLPDRSPHKSPHSSSIEENPFERGISDIEDESSKNSSPLSVELPKGLEGMINVNSLDCKWFNLEVLKSCTNQFSSENLIGKGGSNRVYKGVLPDGKPMAVKVLQSSKESWKDFALEVEIISSLKHKGITPLLGICIEDNALISVYDYFPKGSLEKNLKGKNKDGSILSWEVRFNIAVRIAEALDYLHREALKPVIHRDVKSSNILLSHEFEPQLSDFGLAIWGPTTSSFLTHEDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISYEPCKGQESLVVWAKPIIESGNIKGLLDPNLEGKVDEAQLQRMVLAASLCITRAARLRPKLNQILKILKGDEEVEYFLNSHGNDHEHEENQENIDDEVYPNSSAELHLSLALLGIDNDTTSYSSTDHSSNEQLQEQWSRSSSFN* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00451 660 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 282 387 - -
Rops3g00451 660 SUPERFAMILY Protein kinase-like (PK-like) 295 584 IPR011009 -
Rops3g00451 660 Coils Coil 167 187 - -
Rops3g00451 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Rops3g00451 660 Pfam Protein kinase domain 314 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00451 660 ProSiteProfiles Protein kinase domain profile. 313 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00451 660 MobiDBLite consensus disorder prediction 637 660 - -
Rops3g00451 660 SMART serkin_6 313 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00451 660 Gene3D Transferase(Phosphotransferase) domain 1 388 599 - -
Rops3g00451 660 CDD USP_Like 8 104 - -
Rops3g00451 660 FunFam Putative receptor-like serine/threonine-protein kinase 388 600 - -
Rops3g00451 660 PANTHER OS08G0249100 PROTEIN 166 610 IPR046958 -
Rops3g00451 660 Gene3D Phosphorylase Kinase; domain 1 283 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00451 Rops-Chr3 5601831 5605796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00451 301 611 Trihelix Transcription Factor Family AT1G70460 41.693 2.57e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops3g00451 Pkinase 2.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00451 - - gmx:100789189 1059.67