Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00443 ATGGGAAGGTCCCCTTGTTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACAAAAGAAGAAGATGATAGACTTATATCTTATATTAGAGCTCATGGTGAAGGTTGCTGGCGTTCTCTCCCCAAAGCTGCTGGACTTCTCCGATGTGGCAAGAGTTGCCGTCTCCGGTGGATCAACTATCTCCGACCTGACCTTAAACGTGGCAACTTCACTGAAGAAGAAGATGAACTCATCATCAAACTCCATAGTCTCCTTGGTAACAAGTGGTCTCTGATAGCTGGAAGATTGCCAGGGAGAACAGACAATGAGATAAAGAATTACTGGAACACTCATATAAGAAGGAAGCTTTTGAACAGAGGAATTGACCCTGCAACTCACAGGCCTCTTAATGAAGCTGCTCATGCTCAGAATCAAGAAACTTCAACTGCTACAACTGCTACACCCACCACCATATCTTTTGCTTCAACTGCTAAACAAGAACAAGAAACAAGCACTAGTAACCCAAGCTTGCTTAAAGTTAAAGGGTCCATCACAGAACGTTGCCCTGACTTGAACCTTGAGCTTACTATTAGTCCTCCTCGTCAACAAGAGCCTGATCAACCATTCAAGAACATGGAGAGAAACTTATGCTTTGTTTGCAGTTTGGGTTTGCAGAACAGCAAGGATTGTAGCTGTGGGGTTGGTAATGTTGGCAACACTAGCAGTGGGAGCACCCCTGCTGCTGCTTTTGATTTCTTGGGTTTGAAAGCAGCTGTTTGGGATTACAAAGGCTTGGAAATGAAATGA 786 0.4427 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAAHAQNQETSTATTATPTTISFASTAKQEQETSTSNPSLLKVKGSITERCPDLNLELTISPPRQQEPDQPFKNMERNLCFVCSLGLQNSKDCSCGVGNVGNTSSGSTPAAAFDFLGLKAAVWDYKGLEMK* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00443 261 FunFam MYB-related transcription factor 13 66 - -
Rops3g00443 261 CDD SANT 69 112 IPR001005 -
Rops3g00443 261 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 174 - -
Rops3g00443 261 CDD SANT 16 61 IPR001005 -
Rops3g00443 261 FunFam Myb transcription factor 68 137 - -
Rops3g00443 261 SMART sant 66 114 IPR001005 -
Rops3g00443 261 SMART sant 13 63 IPR001005 -
Rops3g00443 261 Gene3D - 68 146 - -
Rops3g00443 261 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops3g00443 261 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Rops3g00443 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops3g00443 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops3g00443 261 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops3g00443 261 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Rops3g00443 261 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops3g00443 261 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00443 Rops-Chr3 5510326 5511716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00443 1 261 MYB Transcription Factor Family AT4G38620 60.993 4.73e-115 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops3g00443 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00443 K09422 - gmx:780553 401.749