Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00436 ATGATGGCCCTTGAAAATTCAGAAAATATGCAAATAAACTGTGAGACATCTCGAAGATGCCTCCATGGCAAGGGACTCCCTTACAGTTTTAAGTGTAATGGGTTTTCTAACTTGATTTGGGTTAGGCCTGCATCTGAATTTGTCATGTCAAAGGATTCTTTCAAGTCCTTCTTGGGTAGGCCTTGGAAAAAGTACTCAAGGACTTTGCTTCTTAAAACTGATTTAGATGGGTTGATTCATCCAAAAGGGTGGAGTGAATGGAGTGGAAACTTTGCAACCTCAACTTTGTACTATGGAGAGTATATGAACACTGGCAATGGTGCTTCTACACACAATAAGGTGAATTGA 348 0.3994 MMALENSENMQINCETSRRCLHGKGLPYSFKCNGFSNLIWVRPASEFVMSKDSFKSFLGRPWKKYSRTLLLKTDLDGLIHPKGWSEWSGNFATSTLYYGEYMNTGNGASTHNKVN* 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00436 115 Pfam Pectinesterase 42 115 IPR000070 GO:0030599|GO:0042545
Rops3g00436 115 SUPERFAMILY Pectin lyase-like 52 114 IPR011050 -
Rops3g00436 115 Gene3D - 35 115 IPR012334 -
Rops3g00436 115 PANTHER PECTINESTERASE 47 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00436 Rops-Chr3 5403847 5404805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00436 41 115 Carbohydrate Esterase AT3G60730 66.667 2.33e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00436 K01051 - gmx:100792852 131.339