Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00426 ATGTTTGCTGTTTCCTTAATCCAACCTTCATTCTTAGCCAGTGACATCAAACCCTCAAAAAAAACAAGTCTTTATTTTTCAAGAAAAGTTGTTGCCACTCATTCAACAACTGAAAACAGAGGACCCTGTTCTTGTGCCACAAAGATGGCTTCTTCCCTCTATGAAGTGCTTGGAATTTCAATGGGTGCAAGCTGCCTTGAAATTAAGGCAGCTTACAGAAAGCTTGCAAGGACATGCCACCCTGATGTTGTGGCCATGAATCAGAAGGAAAGCTCAGCTAACCAGTTCATGATGATCCATTTAGCTTATTCAACATTGTCTGACCCAGATAAGCGTGCTCAATATGATAGAGAAATCTATGGACACAGAAGATTAGCAAGTAGAGTTTCCATGTCAGGAAGAAAACAAACATTTTCCCATGCTGGAAGGAAATGGGAAACCGATCAATGTTGGTAG 456 0.4079 MFAVSLIQPSFLASDIKPSKKTSLYFSRKVVATHSTTENRGPCSCATKMASSLYEVLGISMGASCLEIKAAYRKLARTCHPDVVAMNQKESSANQFMMIHLAYSTLSDPDKRAQYDREIYGHRRLASRVSMSGRKQTFSHAGRKWETDQCW* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00426 151 SUPERFAMILY Chaperone J-domain 52 121 IPR036869 -
Rops3g00426 151 Gene3D DnaJ domain 43 141 IPR036869 -
Rops3g00426 151 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 8 128 - -
Rops3g00426 151 SMART dnaj_3 51 111 IPR001623 -
Rops3g00426 151 ProSiteProfiles dnaJ domain profile. 52 119 IPR001623 -
Rops3g00426 151 Pfam DnaJ domain 53 116 IPR001623 -
Rops3g00426 151 CDD DnaJ 54 108 IPR001623 -
Rops3g00426 151 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Rops3g00426 151 PRINTS DnaJ domain signature 72 87 IPR001623 -
Rops3g00426 151 PRINTS DnaJ domain signature 54 72 IPR001623 -
Rops3g00426 151 PRINTS DnaJ domain signature 91 111 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00426 Rops-Chr3 5252286 5252895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00426 54 116 C2H2 Transcription Factor Family AT1G74250 46.269 2.58e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00426 - - pcin:129292702 177.563