Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00418 ATGGCGGCTACTGTATCTGCGTGGTCGAAACCCGGCGCATGGGCGCTTGATTCCGAGGAACACGAAGCTGAGCTCCTTCAACAACAAAACCACAACAACGATGACACCACCAAACCCCTCGCCGACTTCCCTTCCCTCGCCGCCGCCGCCGCCACAAAGCCCAAAAAGAAGAAAGCCCAAACCATCTCTTTGGGTGAGTTCACCGCCAAACCCGCCACCTCCTTCACCAACCAAGATCCCATTGTGCTCCCCACCGGTCCTCGCCAGCGCACCGCCGAGGAACTCGAGCGTGACCGGACTCGCCTCGGCGGTGGCTTCAGGTCTTACGGTGACCGTCCCCAGCGGAATTCTGGCGGCGACGAGTCTTCCAATTCAAGATGGGGTTCATCTAGGGTTTCTGATGAACCCAGGCGAAACGGTTCGTTTGGGGCTAGGGATTCGGATCGTGAGTTGGCACCGTCACGTGCTGATGAAATTGATAATTGGGCTGCTGCGAAAAAATCAACCGTGGGTAACGGGTTTGAGAGAAGGGAAAGGGAAAGGAGTGGTTTTTTCGATTCACAGTCACGTGCTGATGAATCGGAGAGTTGGGTTTCTAATAAGAACTTTGTTCCATCGGAAGGGCGGAGATTTGGTTCCGGTGGCGGTGGTGGGTTTGAAAGAGAGAGAAAGGTAGGGTTTGGTACCAGTGGTGGTGCAGATTCGGATAATTGGAACAAGAAGAAGGGTGAATTTAACGTTGGAAGTGACAGAGCCACCGAGAGTGGTTCTTCTGGTGGTGGAAGACCTAGGCTTGTTTTGCAACCTAGGGCTGTGTCTGTGAGTAATGAAAGCCAGGAAAGTGTTTCAAAGCCTAAGGGTCCAAATCCATTCGGAGAGGCAAGGCCAAGGGAACAGGTTTTGGCTGAGAAAGGGCAAGATTGGAAGAAGATTGATGAGCAGCTTGAGACCATGAAGATTAAGGAGACTGTGGTGGAAGGGTTTGGGAAGAGGGCTTTTGGATCTGCCAAGGAAGATAGGACTGAGAGGAGTTGGAGGAAGGCCCTATCTGATGATGGTCGTCCAAAAAGTGCTGAGAAAGTGGAGGATGAACAACACGTTGAAGAAAACTGA 1113 0.5238 MAATVSAWSKPGAWALDSEEHEAELLQQQNHNNDDTTKPLADFPSLAAAAATKPKKKKAQTISLGEFTAKPATSFTNQDPIVLPTGPRQRTAEELERDRTRLGGGFRSYGDRPQRNSGGDESSNSRWGSSRVSDEPRRNGSFGARDSDRELAPSRADEIDNWAAAKKSTVGNGFERRERERSGFFDSQSRADESESWVSNKNFVPSEGRRFGSGGGGGFERERKVGFGTSGGADSDNWNKKKGEFNVGSDRATESGSSGGGRPRLVLQPRAVSVSNESQESVSKPKGPNPFGEARPREQVLAEKGQDWKKIDEQLETMKIKETVVEGFGKRAFGSAKEDRTERSWRKALSDDGRPKSAEKVEDEQHVEEN* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00418 370 MobiDBLite consensus disorder prediction 66 84 - -
Rops3g00418 370 MobiDBLite consensus disorder prediction 171 188 - -
Rops3g00418 370 Pfam Plant specific eukaryotic initiation factor 4B 7 347 IPR010433 GO:0003743
Rops3g00418 370 MobiDBLite consensus disorder prediction 189 203 - -
Rops3g00418 370 MobiDBLite consensus disorder prediction 18 306 - -
Rops3g00418 370 MobiDBLite consensus disorder prediction 90 105 - -
Rops3g00418 370 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 357 IPR010433 GO:0003743
Rops3g00418 370 MobiDBLite consensus disorder prediction 331 370 - -
Rops3g00418 370 MobiDBLite consensus disorder prediction 115 136 - -
Rops3g00418 370 MobiDBLite consensus disorder prediction 138 162 - -
Rops3g00418 370 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00418 Rops-Chr3 5190746 5193190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00418 1 350 Eukaryotic Initiation Factors Gene Family AT4G38710 49.127 4.01e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00418 - - pvu:PHAVU_011G033300g 513.842