Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00414 ATGGAGAGATCCTTTGTATTCTTTACAATCTCCTTGCTTTGTCTCCTCTTGTCTCAACCAGCTAGATCAGAAGATGATTCCCAAGCACTTCTGGCACTTAAATCCTCCATAGATGTTCTCAACAAGCTTCCATGGCAAAGAGGAAGTGATGTATGCACATGGGTAGGAGTCAAAGATTGTTTCAAGGGAAGAGTGAGAAAGCTAGTACTTGAATACTTAAACTTAACAGGAACTTTGGAAGCAAAGATTTTGAACCGTTTGGATCAACTTCGAGTTCTCAGTTTCAAAGGTAACTCACTCTCAGGTCCAATCCCTGACCTTTCAGGCTTGGTCAATCTCAAATCTATATTCCTCAACGACAACAACTTCTCCGGCGAGTTCCCTGCCTCCGTTATCATCCTTCACCGTGTCAAAGTCATAGTTTTATCAGGGAACAAAATCTCCGGCGACATTCCGGCGTCGCTGCTCAAGATCCGGCGACTGTACGTTCTCTACTTGCAAGACAACTTGTTCACAGGAACAATCCCTGGTTTCAACCAAACCGGGCTAAGGTACTTGAATGTCTCCAACAACAAACTTTCCGGTGAAATTCCGGTGACCCCTGCATTGATCCGTTTCAATGCGTCGTCGTTTTCGGGCAACCCCGGTCTCTGCGGCGAGCAGATCCACCGGAAATGCAAAAGCAACACTCTTTTACCACCTTCAATAAGCCCTGGTTATCCTATGATACCAGGAGAGAGGACAACAACATCAAAATCATCGAACCGGACGAAACTGATAAAGATCATTGGAGGGAGTGTCGGTGGGGTTGTTTTGTTACTGATATGTCTGCTTCTGTTATGGGCAATTTGCAAGCACCGTAGGAAGAGGGTGGTGGGTTCTGGAACGAGGAGCAACAAGGGTGGTGCTGACGTGGCAGAAGGAGAGGGAGCTGGTGGTGGAGGAGAAGGTAGAGGTGGTAATAACGAGGGAAAACAAGGGGGTTTTGCATGGGAAGGTGAGGGTCTAGGGAAGTTGGTGTTCTGCGGAGCAGGGGATCGTGAGATGAGTTACAGCTTGGAGGATTTGCTCAAGGCTTCAGCTGAGACTTTGGGGAGGGGTATTGTGGGAAGTACATATAAAGCTGTGATGGAGTCAGGGTTCATTGTTACTGTTAAGAGGTTGAAAGATGCTAGGTACCCTGCGTTAGAGGAGTTTAGGGCACACATTGAGGTCCTTGGGAGACTCAGACACCCTAACTTGGTCCCACTCAGGGCTTACTTCCAAGCAAAGGAGGAACGTCTTCTGGTTTATGATTACTTTCCCAATGGCAGCCTCTTCTCTCTAATTCATGGATCAAAAACATCTGGAGGGGGAAAGCCTCTTCATTGGACATCATGCCTTAAAATTGCTGAAGATCTAGCAACAGGGCTGCTCTATATCCACCAGAACCCTGGGATGACTCATGGAAACCTGAAATCTTCTAATGTGTTGTTGGGTTCTGACTTTGAGTCCTGTCTTACTGATTATGGTCTCACTGCATTCCTTAATCCTGACACAATGGATGAACCAAGTGCCACTTCTTTTTTCTATAGAGCACCTGAGTGCCGCAGCTTTCAAAGGTCACAAACTCAACCAGCTGATGTATACAGTTTTGGTGTCCTTCTCCTTGAACTTTTGACAGGCAAAACACCCTACCAAGACCTTGTTCAGGCACATGGTTCAGATATACCTAGATGGGTTCGGTCAGTGCGTGAAGAAGAGACTGAGTCAGGGGATGATCCTGCCTCTGGCAATGAAGCATCTGAAGAGAAGCTTCAAGCTCTTTTGAACATTGCAATGGCATGTGTTTCACTAGTACCAGAGAACAGGCCTACAATGAGAGAAGTTTTAAAGATGATAAGAGATGCAAGAGGGGAAGCTCATGTCTCATCTAACAGTAGTGATCATTCACCTGGTAGATGGTCAGATACTGTTCAAAGCTTTCCAAGGGAAGAACACTTGAGCATATGA 1992 0.4618 MERSFVFFTISLLCLLLSQPARSEDDSQALLALKSSIDVLNKLPWQRGSDVCTWVGVKDCFKGRVRKLVLEYLNLTGTLEAKILNRLDQLRVLSFKGNSLSGPIPDLSGLVNLKSIFLNDNNFSGEFPASVIILHRVKVIVLSGNKISGDIPASLLKIRRLYVLYLQDNLFTGTIPGFNQTGLRYLNVSNNKLSGEIPVTPALIRFNASSFSGNPGLCGEQIHRKCKSNTLLPPSISPGYPMIPGERTTTSKSSNRTKLIKIIGGSVGGVVLLLICLLLLWAICKHRRKRVVGSGTRSNKGGADVAEGEGAGGGGEGRGGNNEGKQGGFAWEGEGLGKLVFCGAGDREMSYSLEDLLKASAETLGRGIVGSTYKAVMESGFIVTVKRLKDARYPALEEFRAHIEVLGRLRHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGMTHGNLKSSNVLLGSDFESCLTDYGLTAFLNPDTMDEPSATSFFYRAPECRSFQRSQTQPADVYSFGVLLLELLTGKTPYQDLVQAHGSDIPRWVRSVREEETESGDDPASGNEASEEKLQALLNIAMACVSLVPENRPTMREVLKMIRDARGEAHVSSNSSDHSPGRWSDTVQSFPREEHLSI* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00414 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 632 IPR046959 -
Rops3g00414 663 MobiDBLite consensus disorder prediction 293 327 - -
Rops3g00414 663 MobiDBLite consensus disorder prediction 637 663 - -
Rops3g00414 663 Gene3D Phosphorylase Kinase; domain 1 343 433 - -
Rops3g00414 663 Gene3D Ribonuclease Inhibitor 25 179 IPR032675 -
Rops3g00414 663 Pfam Protein kinase domain 361 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00414 663 SUPERFAMILY L domain-like 23 219 - -
Rops3g00414 663 Gene3D Ribonuclease Inhibitor 180 229 IPR032675 -
Rops3g00414 663 ProSiteProfiles Protein kinase domain profile. 358 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops3g00414 663 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 81 175 - -
Rops3g00414 663 SUPERFAMILY Protein kinase-like (PK-like) 362 638 IPR011009 -
Rops3g00414 663 Pfam Leucine rich repeat N-terminal domain 24 57 IPR013210 -
Rops3g00414 663 MobiDBLite consensus disorder prediction 634 663 - -
Rops3g00414 663 Gene3D Transferase(Phosphotransferase) domain 1 434 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00414 Rops-Chr3 5169282 5175367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00414 5 663 Receptor kinase-like Gene Family AT1G60630 62.537 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Rops3g00414 Pkinase 7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00414 - - lja:Lj3g3v3500180.1 1054.66