Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00408 ATGGCATCGGCTTTCGTCAAGCTAGACGATTCTCCAATGTTCCAGAAACAGTTATTTTCTATTGAAGAAACAGCTGACGAGTTAAAGGATCGGTGCCAGACACTATACAAAGGGTGTAAGAAGTTTATGACAGCTCTGGGGGAAGCATATAATGGAGAAATTGCCTTTGCTGATTCGTTAGAAGTATTTGGTGGTGGCCAGGATGACCCTGTTAGTGTATCAATTGGAGGACCCGTCATATCTAAGTTTATTACCACACTGCATGAGCTAGCTACTTTTAAAGAGCTTCTTCGCTCACAAGTAGAGCATGTGTTGATTGACCGGCTGACAGAGTTTATGAATGTTGATTTGCAAGATGCAAAGGATTCTCGCCGTCGTTTAGACAAATCTGTGCATTCATATGATCAGTCACGAGAAAAGTTTGTCTCTTTGAAGAAGAATACACCGGAAGACATTGTCGCTGAATTAGAAGAGGATCTACAAAATTCAAAGTCAGAATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAGTATCAGTTCTTGGAGTCCATAAGTGCAATAATGGATGCTCATTTGAGATACTTTAAACTGGGTCATGACTTGTTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACGTATGCACAACAATCTAAAGAACTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGAACACAGGCGGAGATGGAAAATATACGAGCTTCTAACAGCTATACAGATTTGCCAGGTGCTGATGGCACCCATGTTGTAGGTTTGAACTCTTACAAAAGCTGTGAAGTAGGGTTGCGGTCTGCAACCAAAGGGGAGGCAAGTAATTGGCCTGGAACCAAAGGGGAGGTTCAAACAGTTAAACAGGGCTATCTATTAAAACGGTCATCAATCTCACGAGGAGATTGGAAACGGAGGTTCTTTGTGCTTGATAACCGAGGGAATTTATATTATTACAGAGTGAAGGGAGCCAAACCCATGGGCCCTCAGTCATATAATTTTAGTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCACAACAGGGCAGCGTCTCTAAATGAGGATATTTTGGGTTGTTGTGCAGTTGATCTGTGCACATCCACCATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGTATAATTTCTCCCTCAAAAACTTATACACTGCAGGCTGAAAATGAAGCCGATAGAATGGACTGGGTAAACAAAATTACTGGAGCTATCACATCGCTTTTTAATTTTCAGTTTCTTCAACAGCCTCAGCTTGGTAGATTGCAATTAGAAAATAAAAATTCAGCAATTGGTGCTTCTTCAACAAGTCAATCAGAGGATAGTCATAAATCTTTGATGAATGACATATATTCAAAAGAAGTGGGTAGTGTCTCCAAAATTTTAAGGGGAATTCCTGGGAATGATAAGTGTGCTGAGTGCAGTGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATGTCTCAAAGGTGAGATCTATAACATTAGATGTTAAGGTTTGGGAACCTACTGTTTTGGAGTTATTCAATAACCTAGGTAATACTTATTGTAATTCTATCTGGGAGGGCTTGCTTCTACTTAATGATGAAAGAGTAGGTGAATCACATGTGCCTATGAAACCATGCTCCACTGATGCCTTCCAAGACAAGGAAAAGTACATCCAAGCAAAGTACATAGAGAAATCACTAATCATCCGAGAAGAGGATATACCTGGGAATCCTTCAGTTTCCGCAAGAATCTGGCAAGCAGTTCAGGATATAAATGTACGAGAAGTGTATTGCCTCATAGTCACGGCAACTTCAAATCTGGAACTAGGTTATTAG 1971 0.4059 MASAFVKLDDSPMFQKQLFSIEETADELKDRCQTLYKGCKKFMTALGEAYNGEIAFADSLEVFGGGQDDPVSVSIGGPVISKFITTLHELATFKELLRSQVEHVLIDRLTEFMNVDLQDAKDSRRRLDKSVHSYDQSREKFVSLKKNTPEDIVAELEEDLQNSKSEFEKSRFNLVNSLMNIEVKKKYQFLESISAIMDAHLRYFKLGHDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAEMENIRASNSYTDLPGADGTHVVGLNSYKSCEVGLRSATKGEASNWPGTKGEVQTVKQGYLLKRSSISRGDWKRRFFVLDNRGNLYYYRVKGAKPMGPQSYNFSRSSEQNSGMFGRFRSRHNRAASLNEDILGCCAVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNFQFLQQPQLGRLQLENKNSAIGASSTSQSEDSHKSLMNDIYSKEVGSVSKILRGIPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNLGVHVSKVRSITLDVKVWEPTVLELFNNLGNTYCNSIWEGLLLLNDERVGESHVPMKPCSTDAFQDKEKYIQAKYIEKSLIIREEDIPGNPSVSARIWQAVQDINVREVYCLIVTATSNLELGY* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00408 656 Gene3D - 300 443 IPR011993 -
Rops3g00408 656 SUPERFAMILY BAR/IMD domain-like 8 327 IPR027267 -
Rops3g00408 656 Coils Coil 153 173 - -
Rops3g00408 656 PRINTS HIV Rev interacting protein signature 519 536 IPR001164 GO:0005096
Rops3g00408 656 PRINTS HIV Rev interacting protein signature 500 519 IPR001164 GO:0005096
Rops3g00408 656 PRINTS HIV Rev interacting protein signature 542 563 IPR001164 GO:0005096
Rops3g00408 656 SUPERFAMILY PH domain-like 305 453 - -
Rops3g00408 656 CDD PH_ACAP 307 442 - -
Rops3g00408 656 PANTHER CENTAURIN/ARF 3 647 IPR045258 GO:0005096
Rops3g00408 656 CDD BAR_SFC_plant 16 217 IPR035670 -
Rops3g00408 656 Pfam Putative GTPase activating protein for Arf 492 612 IPR001164 GO:0005096
Rops3g00408 656 ProSiteProfiles PH domain profile. 304 438 IPR001849 -
Rops3g00408 656 Pfam PH domain 306 437 IPR001849 -
Rops3g00408 656 Gene3D Arf GTPase activating protein 468 619 IPR038508 -
Rops3g00408 656 SMART arf_gap_3 488 620 IPR001164 GO:0005096
Rops3g00408 656 ProSiteProfiles BAR domain profile. 3 227 IPR004148 GO:0005515|GO:0005737
Rops3g00408 656 CDD ArfGap 492 607 - -
Rops3g00408 656 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Rops3g00408 656 SMART PH_update 305 440 IPR001849 -
Rops3g00408 656 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Rops3g00408 656 SUPERFAMILY ArfGap/RecO-like zinc finger 490 613 IPR037278 -
Rops3g00408 656 ProSiteProfiles ARF GTPase-activating proteins domain profile. 488 620 IPR001164 GO:0005096
Rops3g00408 656 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Rops3g00408 656 Coils Coil 229 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00408 Rops-Chr3 5068451 5091941 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00408 498 607 C2H2 Transcription Factor Family AT3G07940 42.342 8.91e-19 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00408 K12489 - gmx:100796740 1130.16