Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00402 ATGGTGGTGATCATGCAAGAACAACAACAGCAACAGCAGCAGAATTCTTCTGCACTGCCACTGCTTCCTCAATCTTCCCCAACCGCCACTTCCCTTAGGTCACCCTCCGTTCCCTCCCCCCTCTCTGTCGCTCCTCAACGCCAAGCCCTACCCCCTTCTGTTCCGGTGCCCGTCGCGGCGGATCTTCCGTCCGGTGAGCCTGTTTTGACGGCGCCTCCGCCGACGTCCCCGTTGGTTAGAGTCCGTCTGTCGGACATTGTCCCCTACGACGGGGCACCGGCGGGGCCTTATGTCAGAGCAATGGAAGCACTTTCTGCTTCTCTGATGAGACACAATGCTGCGTTGATTGAATTAGGGAACGAAGACACTGCTCTCATGCGTTGTGGTTTGGAAGGTGCAAGGTTGTTTTTTAGAAGCAGGGCTCACATGGGTGTTGGGAAGGGAAGTCGTGGGGTTTATATGTATAGGGCAGGAAGGGCTTTGGAGGATTGGGATTCATCTCCACCTTGTATGGCTGATATTTTTAGGTGTATGGGAAAGGCTTCTCGTTCTGCTTTGTCTGCTATTGCAAAGCATCTGCGCCTTCGAAGCGATGTTTTTAACCAATTGCTTGATGATGCTCCGTTGCCTGCTAATGAGGTGTCTTCATCTGTTCTTGTTGCAACCTACTCACACGCTTCTTTGCAAAATGGAAAAGGTGCCATTGGAGGCGGTAAGCCTACCACGAACGGTGAAGTTGAGAAGGGATTGTTGACATTGATATCTTCTGACACTCCTGGTCTACAGGTATGTGATCCCAATGGCCGCTGGTATCTGGCAGACAGTGGCTGCCGGCCTGGAGATCTTCTACTGATAACAGGCAAGGCTTTTAGCCATGCTACTGCAGGCCTACGTCCTGCTGCATTGTATAGAGCTTCTCAAGATTATTTTCTGAGTTCCAATAGTGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCTCAGGGCAATGCTATATTAGATTGTTCTCCAATTGCAGCAGCAGGCCATGCTGTCCCTCAAAGCTATGTTCCAATTTCTGTAAGCCAATTTATGGATGAACTTGCTGCTGAAGAACTGGTAGGCGACAGATGTGATAATGCTGATGTTGGTCAAAGCAATGTAAATAAGGAACCATCATTAAGAAGTGTTCTATCAGATCCTTTGTCTGGCACATTCCTTGAAGATGCAATGGTTGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTAAGGAAAGTCATTGAAACATCAAGATGCACTCTCTGTAATGCTGATATTGAGACCGGTTCTCTGATCCCTAATCTTGCTCTTAGGGCTGCGGCTGCTGCTGTCAGGCATGAGGATGATCGAAGGTTATTTCGTAATGCCGCTCTCCGAAAGCGGCGGAAAGAAATGGGCGACCAAATGGATCCAATGAGAAGAGGGAACAGGGAAAATGGAGATTTTACTGCTGCTGATGGGCTCCAACGAGGAGTACAATATCCATTTTCCGTAAATGAGAAAGTTATTATTAAGGGTAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTGTCATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGAACTGGAGAGAATGTCCGCCTCCAGTACCGTTCTCTTAGGAAGCTCCTAAACTCACCAACCATAGAGGACCAGTGTCACTCGCAGCCAATTCAAAATAGCAGCTCTTAA 1737 0.4801 MVVIMQEQQQQQQQNSSALPLLPQSSPTATSLRSPSVPSPLSVAPQRQALPPSVPVPVAADLPSGEPVLTAPPPTSPLVRVRLSDIVPYDGAPAGPYVRAMEALSASLMRHNAALIELGNEDTALMRCGLEGARLFFRSRAHMGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRSALSAIAKHLRLRSDVFNQLLDDAPLPANEVSSSVLVATYSHASLQNGKGAIGGGKPTTNGEVEKGLLTLISSDTPGLQVCDPNGRWYLADSGCRPGDLLLITGKAFSHATAGLRPAALYRASQDYFLSSNSGGRTSLAYRLMPQGNAILDCSPIAAAGHAVPQSYVPISVSQFMDELAAEELVGDRCDNADVGQSNVNKEPSLRSVLSDPLSGTFLEDAMVVSCGHSFGGLMLRKVIETSRCTLCNADIETGSLIPNLALRAAAAAVRHEDDRRLFRNAALRKRRKEMGDQMDPMRRGNRENGDFTAADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKLLNSPTIEDQCHSQPIQNSSS* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00402 578 MobiDBLite consensus disorder prediction 1 58 - -
Rops3g00402 578 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 75 570 - -
Rops3g00402 578 Gene3D - 150 367 IPR027443 -
Rops3g00402 578 MobiDBLite consensus disorder prediction 1 43 - -
Rops3g00402 578 SUPERFAMILY RING/U-box 387 453 - -
Rops3g00402 578 SUPERFAMILY Clavaminate synthase-like 166 361 - -
Rops3g00402 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 455 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00402 Rops-Chr3 5033467 5040840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00402 387 563 Plant U-box Gene Family AT5G05230 40.782 2.73e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00402 - - adu:107477161 915.605