Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g00400 ATGGCTCCCAAAAGAGGTGGAAAAGCTCCTGTTCCAGCTTCCAAGAAGAAGCCTGAGAAGGTTACAAACCCGCTGTTCGAGAAGCGTCCCAAGCAGTTTGGAATTGGAGGGGCATTGCCTCCGAAGAGGGACCTTACCAGATTCGTGAAGTGGCCTAAGACTGTTCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGATTGAAGGTTCCCCCAGCTTTGAACCAGTTCACTAAAACCCTCGACAAAAACCTCGCAACCAGCCTGTTCAAGATACTTCTGAAGTACAGGCCTGAGGATAAGGCAGAAAAGAAGGAGCGGCTTTTGAAAAGGGCACAGGCAGAGACCGAAGGCAAAACTGTTGAAGCTAAGAAGCCTATTGTTGTGAAGTACGGTCTCAATCATGTTACTTACCTTATTGAGCAGAATAAAGCGCAGTTGGTGGTGATTGCTCATGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTTAAGGGCAAGGCTCGCCTAGGATCTATTGTCCATAAGAAAAATGCATCTGTTTTGTGCTTGACAACTGTTAAGAATGAAGACAAATTGGAGTTCAGCAGAGTCCTAGAAGCTATCAAGGCTAACTTCAATGACAAGTATGACGAGTACAGAAAGAAGTGGGGTGGTGGGATCATGGGTTCCAAATCCCAAGCCAAAACCAAGGCAAAGGAAAGGCTTCTTGCCAAGGAAGCTGCTCAGAGAATGTCTTAG 780 0.4628 MAPKRGGKAPVPASKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAETEGKTVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKNASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKERLLAKEAAQRMS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g00400 259 MobiDBLite consensus disorder prediction 1 37 - -
Rops3g00400 259 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 116 206 IPR004038 -
Rops3g00400 259 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 43 242 - -
Rops3g00400 259 MobiDBLite consensus disorder prediction 12 26 - -
Rops3g00400 259 FunFam 60S ribosomal protein L7a 51 234 - -
Rops3g00400 259 SUPERFAMILY L30e-like 89 230 IPR029064 -
Rops3g00400 259 ProSitePatterns Ribosomal protein L7Ae signature. 167 184 IPR004037 GO:0042254|GO:1990904
Rops3g00400 259 Gene3D - 51 234 IPR029064 -
Rops3g00400 259 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Rops3g00400 259 PRINTS Ribosomal protein L7A/RS6 family signature 164 174 IPR018492 -
Rops3g00400 259 PRINTS Ribosomal protein L7A/RS6 family signature 148 161 IPR018492 -
Rops3g00400 259 PRINTS Ribosomal protein L7A/RS6 family signature 174 188 IPR018492 -
Rops3g00400 259 PRINTS Ribosomal protein L7A family signature 218 238 IPR001921 -
Rops3g00400 259 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Rops3g00400 259 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Rops3g00400 259 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Rops3g00400 259 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Rops3g00400 259 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Rops3g00400 259 PRINTS Ribosomal protein L7A family signature 186 210 IPR001921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g00400 Rops-Chr3 4972546 4974700 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g00400 1 259 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.714 2.83e-168 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g00400 K02936 - gmx:100792324 482.256